Publications

2017

2016

  • The Eighth Central European Conference “Chemistry towards Biology”: Snapshot

    András Perczel , Ricardo D. Enriz , Atanas G. Atanasov , Vladimír Sklenář , Jiří Nováček , Veronika Papoušková , Pavel Kadeřávek , Lukáš Žídek , Henryk Kozłowski , Joanna Wątły , Aleksandra Hecel , Paulina Kołkowska , Jaroslav Koča , Radka Svobodová-Vařeková , Lukáš Pravda , David Sehnal , Vladimír Horský , Stanislav Geidl , Pavel Matějka , Adéla Jeništová , Marcela Dendisová , Alžběta Kokaislová , Volkmar Weissig , Mark Olsen , Aidan Coffey , Jude Ajuebor , Ruth Keary , Marta Sanz-Gaitero , Mark J. van Raaij , Olivia McAuliffe , Birgit Waltenberger , Andrei Mocan , Karel Šmejkal , Elke H. Heiss , Marc Diederich , Robert Musioł , Janez Košmrlj , Jarosław Polański , Josef Jampílek

    Molecules (2016) 21(10):1381 DOI:10.3390/molecules21101381 Kivonat

  • Origin of problems related to Staudinger reduction in carbopeptoid syntheses

    Barbara Csordás , Adrienn Nagy , Veronika Harmat , Virág Zsoldos-Mády , Ibolya Leveles , István Pintér , Viktor Farkas , András Perczel

    Amino Acids (2016) 48(11):2619-2633 DOI: 10.1007/s00726-016-2289-x | PMID: 27438266 Kivonat

  • Multi-level changes in protein dynamics upon complex formation of the calcium-loaded S100A4 with a non-muscle myosin IIA tail fragment

    Gyula Pálfy , Bence Kiss , László Nyitray , Andrea Bodor

    ChemBioChem (2016) 17(19):1829-1838 DOI: 10.1002/cbic.201600280 | PMID: 27418229 Kivonat

  • Aromatic cluster sensor of protein folding: near-UV ECD bands assigned to fold compactness

    Viktor Farkas , Imre Jákli , Gábor K. Tóth , András Perczel

    Chemistry A Eur. J. (2016) 22(39):13871–13883. DOI: 10.1002/chem.201602455 | PMID: 27504963 Kivonat

  • Hydrogen-Bonding Network Anchors the Cyclic Form of Sugar Arylhydrazones

    Viktória Goldschmidt Gőz , István Pintér , Antal Csámpai , Imre Jákli , Virág Zsoldos-Mády , András Perczel

    Eur. J. Org. Chem. (2016) 20:3419-3426. DOI: 10.1002/ejoc.201600462 Kivonat

  • The clear and dark sides of water: influence on the coiled coil folding domain

    Tamás Vajda , András Perczel

    Biomol.Concepts (2016) 7(3):189-195. DOI:10.1515/bmc-2016-0005 | PMID: 27180359 Kivonat

  • Bacterial expression and/or solid phase peptide synthesis of 20-40 amino acid long polypeptides and miniproteins, the case study of Class B GPCR ligands

    Pál Stráner , Nóra Taricska , Mária Szabó , Gábor K. Tóth , András Perczel

    Curr. Prot. Pept. Sci. (2016) 17(2):147-155. DOI: 10.2174/1389203716666151102105215 | PMID: 26521952 Kivonat

  • Small Peptides Derived from Penetratin as Antibacterial Agents

    Oscar Parravicini , Csaba Somlai , Sebastián A. Andujar , Adriana D. Garro , Beatriz Lima , Alejandro Tapia , Gabriela Feresin , András Perczel , Gábor Tóth , Javier López Cascales , Ana M. Rodríguez , Ricardo D. Enriz

    Arch.Pharm.Chem.Life.Sci. (2016) 349:242-251. DOI: 10.1002/ardp.201500419 Kivonat

  • Structural basis of Ribosomal S6 Kinase 1 (RSK1) inhibition by S100B Protein: modulation of the Extracellular Signal-regulated Kinase (ERK) signaling cascade in a calcium-dependent way

    Gergő Gógl , Anita Alexa , Bence Kiss , Gergely Katona , Mihály Kovács , Andrea Bodor , Attila Reményi , László Nyitray

    J. Biol. Chem. (2016) 291(1):11-27. DOI: 10.1074/jbc.M115.684928 | PMID: 26527685 Kivonat

2015

  • An engineered scorpion toxin analogue with improved Kv1.3 selectivity displays reduced conformational flexibility

    Ádám Bartók , Krisztina Fehér , Andrea Bodor , Kinga Rákosi , Gábor K. Tóth , Katalin E. Kövér , György Panyi , Zoltán Varga

    Scientific Reports (2015) 5:18397. DOI: 10.1038/srep18397 | PMID: 26689143 Kivonat

  • Chiral recognition studies of α‑(nona fluoro-tert-butoxy)carboxylic acids by NMR spectroscopy

    Anikó Nemes , Tamás Csóka , Szabolcs Béni , Viktor Farkas , József Rábai , Dénes Szabó

    J. Org. Chem. (2015) 80(12):6267–6274 | DOI: 10.1021/acs.joc.5b00706 | PMID: 26024423 Kivonat

  • Structural assembly of the signaling competent ERK2–RSK1 heterodimeric protein kinase complex

    Anita Alexa , Gergő Gógl , Gábor Glatz , Ágnes Garai , András Zeke , János Varga , Erika Dudás , Norbert Jeszenői , Andrea Bodor , Csaba Hetényi , Attila Reményi

    Proc. Natl. Acad. Sci. USA (2015) 112(9):2711-2716. | DOI: 10.1073/pnas.1417571112 | PMID: 25730857 Kivonat

  • Membrane interactions in small fast-tumbling bicelles as studied by 31P NMR

    Andrea Bodor , Katalin E. Kövér , Lena Mäler

    BBA Biomembranes (2015) 1848(3):760-766. | DOI: 10.1016/j.bbamem.2014.12.001 | PMID: 25497765 Kivonat

  • Catalytically distinct states captured in a crystal lattice: the substrate-bound and scavenger states of acylaminoacyl peptidase and their implications for functionality

    Dóra K. Menyhárd , Zoltán Orgován , Zoltán Szeltner , Ilona Szamosi , Veronika Harmat

    Acta Crystallogr D Biol Crystallogr. (2015) 71(Pt 3):461-472. | DOI: 10.1107/S1399004714026819 | PMID: 25760596 Kivonat

  • Development of cyclic NGR-peptides with thioether linkage: structure and dynamics determining deamidation and bioactivity

    Kata N. Enyedi , András Czajlik , Krisztina Knapp , András Láng , Zsuzsa Majer , Eszter Lajkó , László Kőhidai , András Perczel , Gábor Mező

    J. Med. Chem. (2015) 58(4):1806-1817. | DOI: 10.1021/jm501630j | PMID: 25646854 Kivonat

  • Phosphorylation as Conformational Switch from the Native to Amyloid State: Trp-Cage as a Protein Aggregation Model

    József Kardos , Bence Kiss , András Micsonai , Petra Rovó , Dóra K. Menyhárd , János Kovács , Gábor K. Tóth , András Perczel

    J. Phys. Chem. B (2015) 119(7):2946–2955. | DOI: 10.1021/jp5124234 | PMID: 25625571 Kivonat

2014

  • DYNLL2 Dynein Light Chain Binds to an Extended Linear Motif of Myosin 5a Tail That Has Structural Plasticity

    Andrea Bodor , László Radnai , Csaba Hetényi , Péter Rapali , András Láng , Katalin E. Kövér , András Perczel , Weixiao Y. Wahlgren , Gergely Katona , László Nyitray

    Biochemistry (2014) 53(45):7107-7122. | DOI: 10.1021/bi500574z | PMID: 25312846 Kivonat

  • Role of water in protein folding, oligomerization, amyloidosis and miniprotein

    Tamás Vajda , András Perczel

    J. Pept. Sci. (2014) 20(10):747-759. | DOI: 10.1002/psc.2671. | PMID: 25098401 Kivonat

  • Conservative Evolution, Sustainability, and Culture

    Gábor Náray-Szabó

    Kivonat

  • Protein structure and dynamics

    Gábor Náray-Szabó , András Perczel

    Int. J. Terraspace Sci. Eng. (2014) 6:7-16

  • Strictly localised molecular orbitals in QM/MM methods (in Protein Modelling)

    György G Ferenczy , Gábor Náray-Szabó

  • Dynamics of small, folded proteins (in Protein Modelling)

    Petra Rovó , Dóra K. Menyhárd , Gábor Náray-Szabó , András Perczel

  • Probing of primed and unprimed sites of calpains: Design, synthesis and evaluation of epoxysuccinyl-peptide derivatives as selective inhibitors

    Levente E Dókus , Dóra K. Menyhárd , Ágnes Tantos , Ferenc Hudecz , Zoltán Bánóczi

    European Journal of Medicinal Chemistry (2014) 82:274-280. | DOI: 10.1016/j.ejmech.2014.05.058 | PMID: 24915003 Kivonat

  • Rational Design of α-Helix-Stabilized Exendin-4 Analogues

    Petra Rovó , Viktor Farkas , Pál Stráner , Mária Szabó , Ágnes Jermendy , Orsolya Hegyi , Gábor K. Tóth , András Perczel

    Biochemistry (2014) 53(22):3540-3552. | DOI: 10.1021/bi500033c | PMID: 24828921 Kivonat

  • The C-terminal random coil region tunes the Ca²⁺-binding affinity of S100A4 through conformational activation

    Annette Duelli , Bence Kiss , Ida Lundholm , Andrea Bodor , Maxim V. Petoukhov , Dmitri I. Svergun , László Nyitray , Gergely Katona

    PLoS One (2014) 9(5):e97654 | DOI: 10.1371/journal.pone.0097654 | PMID: 24830809 Kivonat

  • On the Mechanism of Bifunctional Squaramide-Catalyzed Organocatalytic Michael Addition: A Protonated Catalyst as an Oxyanion Hole

    Bianka Kótai , György Kardos , Andrea Hamza , Viktor Farkas , Imre Pápai , Tibor Soós

    Chem. Eur. J. (2014) 20(19):5631-5639. | DOI: 10.1002/chem.201304553 | PMID: 24677388 Kivonat

  • Önszerveződés és hajlékonyság: szubsztrát szelekciós stratégiák oligopeptidázokban

    Harmat Veronika

    MAGYAR KÉMIAI FOLYÓIRAT - KÉMIAI KÖZLEMÉNYEK (2014) 120(4):155-158

  • Impairment of a model peptide by oxidative stress: Thermodynamic stabilities of asparagine diamide Cα-radical foldamers

    Klára Z. Gerlei , Lilla Élő , Béla Fiser , Michael C. Owen , Imre Jákli , Svend J. Knak Jensen , Imre G. Csizmadia , András Perczel , Béla Viskolcz

    Chem. Phys. Lett. (2014) 593:104–108. | DOI: 10.1016/j.cplett.2013.12.037 Kivonat

  • A theoretical study of the stability of disulfide bridges in various β-sheet structures of protein segment models

    Natalie J. Galant , Heeyeon Cheryl Song , Imre Jákli , Béla Viskolcz , Imre G. Csizmadia , Svend J. Knak Jensen , András Perczel

    Chem. Phys. Lett. (2014) 593:48–54. | DOI: 10.1016/j.cplett.2013.12.065 Kivonat

  • Mutation-dependent recessive inheritance of NPHS2-associated steroid-resistant nephrotic syndrome

    Kálmán Tory , Dóra K. Menyhárd , Stéphanie Woerner , Fabien Nevo , Olivier Gribouval , Andrea Kerti , Pál Stráner , Christelle Arrondel , Evelyne Huynh Cong , Tivadar Tulassay , Géraldine Mollet , András Perczel , Corinne Antignac

    Nat. Genet. (2014) 46:299–304 | DOI: 10.1038/ng.2898 | PMID: 24509478 Kivonat

2013

  • Structure and enzymatic mechanism of a moonlighting dUTPase

    Ibolya Leveles , Veronika Németh , Judit E. Szabó , Veronika Harmat , Kinga Nyíri , Ábris Ádám Bendes , Veronika Papp-Kádár , Imre Zagyva , Gergely Róna , Olivér Ozohanics , Károly Vékey , Judit Tóth , Beáta G. Vértessy

    Acta Crystallogr D Biol Crystallogr. (2013) D69:2298-2308. | DOI: 10.1107/S0907444913021136 | PMID: 24311572 Kivonat

  • Atropisomerism of the Asn α Radicals Revealed by Ramachandran Surface Topology.

    Klára Z. Gerlei , Imre Jákli , Milán Szőri , Svend J. Knak Jensen , Béla Viskolcz , Imre G. Csizmadia , András Perczel

    J. Phys. Chem. B (2013) 117(41):12402-12409. | DOI: 10.1021/jp4070906 | PMID: 24015919 Kivonat

  • Multiple fuzzy interactions in the moonlighting function of thymosin-β4

    Ágnes Tantos , Beáta Szabó , András Láng , Zoltán Varga , Maksym Tsylonok , Mónika Bokor , Tamás Verebélyi , Pawel Kamasa , Kálmán Tompa , András Perczel , László Buday , Si Hyung Lee , Yejin Choo , Kyou-Hoon Han , Péter Tompa

    Intrinsically Disordered Proteins (2013) Kivonat

  • Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling

    Orsolya Barabás , Vince I. Grolmusz , Zoltán Szabadka , Imre Zagyva , Zoltán Kele , Edina Rosta , András Perczel , Andrea Bodor , Veronika Németh , Matthias Wilmanns

    Nucleic Acids Res. (2013) DOI: 10.1093/nar/gkt756 | PMID: 23982515 Kivonat

  • Penetratin and derivatives acting as antibacterial agents

    Adriana D. Garro , Ana M. Rodríguez , Javier López Cascales , Botond Penke , Csaba Somlai , András Perczel , Gabriela Feresin , Alejandro Tapia , Beatriz Lima , José A. Bombasaro , Mónica S. Olivella , Ricardo D. Enriz

    Chem. Biol. Drug. Des. (2013) 82(2):167-177. | DOI: 10.1111/cbdd.12143 | PMID: 23581817 Kivonat

  • Quantum Mechanical Modeling: A Tool for the Understanding of Enzyme Reactions

    Gábor Náray-Szabó , Julianna Oláh , Balázs Krámos

    Biomolecules (2013) 3:662-702. | DOI: 10.3390/biom3030662 Kivonat

  • Foldamers of β-peptides: conformational preference of peptides formed by rigid building blocks. The first MI-IR spectra of a triamide nanosystem.

    Gábor Pohl , Esther Gorrea , Vicenç Branchadell , Rosa M. Ortuño , András Perczel , György Tarczay

    Amino Acids (2013) 45(4):957-973. | DOI: 10.1007/s00726-013-1552-7 | PMID: 23860847 Kivonat

  • A self-compartmentalizing hexamer serine protease from Pyrococcus horikoshii: substrate selection achieved through multimerization

    Dóra K. Menyhárd , Anna Kiss-Szemán , Éva Tichy-Rács , Balázs Hornung , Krisztina Rádi , Zoltán Szeltner , Klarissza Domokos , Ilona Szamosi , Gábor Náray-Szabó , László Polgár , Veronika Harmat

    J Biol Chem (2013) 288(24):17884-17894. | DOI: 10.1074/jbc.M113.451534 | PMID: 23632025 Kivonat

  • Helix compactness and stability: Electron structure calculations of conformer

    Imre Jákli , Szilárd N. Fejér , Ödön Farkas , Béla Viskolcz , Svend J. Knak Jensen , Imre G. Csizmadia , András Perczel

    Chem. Phys. Lett. (2013) 563:80-87. Kivonat

  • Foldamer Stability Coupled to Aggregation Propensity of Elongated Trp-Cage Miniproteins

    Viktor Farkas , Barbara Csordás , Orsolya Hegyi , Gábor K. Tóth , András Perczel

    Eur. J. Org. Chem. (2013) 13:3513-3522. | DOI: 10.1002/ejoc.201300071 Kivonat

  • Quantitative characterization of the activation steps of Mannan-Binding Lectin (MBL)-Associated Serine Proteases (MASPs) points to the central role of MASP-1 in the initiation of the complement lectin pathway

    Márton Megyeri , Veronika Harmat , Balázs Major , Ádám Végh , Júlia Balczer , Dávid Héja , Katalin Szilágyi , Dániel Datz , Gábor Pál , Péter Závodszky , Péter Gál , József Dobó

    J Biol Chem (2013) 288(13):8922-8934. | DOI: 10.1074/jbc.M112.446500 | PMID: 23386610 Kivonat

  • Structural insights into the Trp-cage folding intermediate formation

    Petra Rovó , Pál Stráner , András Láng , István Bartha , Kristóf Huszár , László Nyitray , András Perczel

    Chem. Eur. J. (2013) 19(8):2628-2640. | DOI: 10.1002/chem.201203764 | PMID: 23319425 Kivonat

2012

  • Monospecific inhibitors show that both mannan-binding lectin-associated serine protease-1 (MASP-1) and -2 Are essential for lectin pathway activation and reveal structural plasticity of MASP-2

    Dávid Héja , Veronika Harmat , Krisztián Fodor , Matthias Wilmanns , József Dobó , Péter Závodszky , Péter Gál , Gábor Pál

    J. Biol. Chem. (2012) 287(24):20290-300. doi: 10.1074/jbc.M112.354332 | PMID: 22511776 Kivonat

  • Synthesis and preliminary structural and binding characterization of new enantiopure crown ethers containing an alkyl diarylphosphinate or a proton-ionizable diarylphosphinic acid unit

    György Székely , Barbara Csordás , Viktor Farkas , József Kupai , Péter Pogány , Zsuzsanna Sánta , Zoltán Szakács , Tünde Tóth , Miklós Hollósi , Péter Huszthy

    Eur. J. Org. Chem. (2012) 18:3396-3407. DOI: 10.1002/ejoc.201101769 Kivonat

  • The role of entropy in initializing the aggregation of peptides: A first principle study on oligopeptide oligomerization

    Pohl G , Jákli I , Csizmadia IG , Papp D , Matías GF , Perczel A

    PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2012) 14:(4) pp. 1507-1516. Kivonat

  • Exploiting diverse stereochemistry of b-amino acids: Toward a rational design of sheet-forming b-peptide systems

    Pohl G , Beke-Somfai T , Csizmadia IG , Perczel A

    AMINO ACIDS (2012) 43:(2) pp. 735-749. Kivonat

  • Chemistry for life sciences

    Perczel A , Kiss T

    ACTUALITE CHIMIQUE &:( (2012) 360) p. A3. Kivonat

  • Chemical stability and structure - activity relationship studies of novel cyclic NGR peptides

    MEZŐ G , Horvath R , Orgovan N , Kohidai L , LAJKÓ E , CZAJLIK A , Majer Z , Mihala N , Hegedues R , SZABÓ I , ENYEDI K , Perczel A

    JOURNAL OF PEPTIDE SCIENCE (2012) 18:(1) pp. S178-S179. Kivonat

  • Variation of conformational properties at a glance. True graphical visualization of the Ramachandran surface topology as a periodic potential energy surface

    Jákli I , Knak Jensen SJ , Csizmadia IG , Perczel A

    CHEMICAL PHYSICS LETTERS (2012) 547: pp. 82-88. Kivonat

  • Secondary structure of short β-peptides as the chiral expression of monomeric building units: A rational and predictive model

    Gorrea E , Pohl G , Nolis P , Celis S , Burusco KK , Branchadell V , Perczel A , Ortuño RM

    JOURNAL OF ORGANIC CHEMISTRY (2012) 77:(21) pp. 9795-9806. Kivonat

  • Charged single alpha-helices in proteomes revealed by a consensus prediction approach

    Gáspári Z , Süveges D , Perczel A , Nyitray L , Tóth G

    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2012) 1824: pp. 637-646. Kivonat

  • Kémlelni a láthatatlant: építőelemek, foldamerek, peptidek, és fehérjék

    Bodor Andrea , Farkas Viktor , Harmat Veronika , Jákli Imre , Karancsiné Menyhárd Dóra , Stráner Pál , Perczel András

    MAGYAR KÉMIAI FOLYÓIRAT - KÉMIAI KÖZLEMÉNYEK (2012) 118: pp. 159-167.

  • Estimating intrinsic structural preferences of de novo emerging random-sequence proteins: Is aggregation the main bottleneck?

    Annamária F Ángyán , András Perczel , Zoltán Gáspári

    FEBS LETTERS (2012) 586: pp. 2468-2472. Kivonat

2011

  • Crystallization and preliminary crystallographic analysis of dUTPase from the φ11 helper phage of Staphylococcus aureus

    Ibolya Leveles , Gergely Róna , Imre Zagyva , Ábris Ádám Bendes , Veronika Harmat , Beáta G. Vértessy

    Acta Crystallogr Sect F Struct Biol Cryst Commun. (2011) 67(Pt 11):1411-1413. | DOI: 10.1107/S1744309111034580 | PMID: 22102244 Kivonat

  • Freezing effect on chirality amplification of L-asparagine by crystallization of the racemate in preferential condition

    Tamás Vajda , Miklós Hollósi

    CRYOLETTERS (2011) 32: 447-450 | PMID: 22227704 Kivonat

  • Suzuki-Miyaura cross-coupling reactions of halo derivatives of 4H-pyrido[1,2-a]pyrimidin-4-ones

    Annamária Molnár , Anita Kapros , László Párkányi , Zoltán Mucsi , Gábor Vlád , István Hermecz

    Org Biomol Chem (2011) 9(19):6559-6565. DOI: 10.1039/c1ob05505d PMID: 21808806 Kivonat

  • Transformation of aldose formazans. Novel synthesis of 2-acetamido-2-deoxypentonolactones and a new pent-2-enose formazan.

    Zsoldos-Mády V , Pintér I , Peredy-Kajtár M , Perczel A

    Carbohydr Res (2011) 346(12):1534-1540. DOI: 10.1016/j.carres.2011.04.026 PMID: 21592466 Corrigendum: Carbohydr Res (2011) 346(17): 2823. Kivonat

  • Cooperativity network of Trp-cage miniproteins: probing salt-bridges

    Petra Rovó , Viktor Farkas , Orsolya Hegyi , Orsolya Szolomájer-Csikós , Gábor K. Tóth , András Perczel

    J Pept Sci (2011) 17(9):610-619. DOI: 10.1002/psc.1377 PMID: 21644245 Kivonat

  • Directed evolution reveals the binding motif preference of the LC8/DYNLL hub protein and predicts large numbers of novel binders in the human proteome

    Péter Rapali , László Radnai , Dániel Süveges , Veronika Harmat , Ferenc Tölgyesi , Weixiao Y. Wahlgren , Gábor Pál

    PLoS One (2011) 6(4):e18818. | DOI: 10.1371/journal.pone.0018818 | PMID: 21533121 Kivonat

  • Structure and catalysis of acylamonoacyl peptidase: closed and open subunits of a dimer oligopeptidase

    Veronika Harmat , Klarissza Domokos , Dóra K. Menyhárd , Anna Palló , Zoltán Szeltner , Ilona Szamosi , Tamás Beke , Gábor Náray-Szabó , László Polgár

    Journal of Biological Chemistry (2011) 286:1987-1998. PMID: 21084296 | DOI: 10.1074/jbc.M110.169862 Kivonat

  • Erratum: Transformation of aldose formazans. Novel synthesis of 2-acetamido-2-deoxypentonolactones and a new pent-2-enose formazan (Carbohydrate Research (2011) 346 (1534-1540))

    Zsoldos-Mády V , Pintér I , Peredy-Kajtár M , Perczel A

    CARBOHYDRATE RESEARCH (2011) 346:(17) p. 2823. Kivonat

  • Zn(2+)-induced rearrangement of the disordered TPPP/p25 affects its microtubule assembly and GTPase activity.

    Zotter A , Oláh J , Hlavanda E , Bodor A , Perczel A , Szigeti K , Fidy J , Ovádi J

    BIOCHEMISTRY (2011) 50:(44) pp. 9568-9578. Kivonat

  • Disordered TPPP/P25 Binds GTP and Displays Mg(2+)-Dependent Gtpase Activity.

    Zotter A , Bodor A , Oláh J , Hlavanda E , Orosz F , Perczel A , Ovádi J

    FEBS LETTERS (2011) 585:(5) pp. 803-808. Kivonat

  • Hyperfine-Shifted (13)C Resonance Assignments in an Iron-Sulfur Protein with Quantum Chemical Verification: Aliphatic C-H center dot center dot center dot S 3-Center-4-Electron Interactions

    Westler WM , Lin IJ , Perczel A , Weinhold F , Markley JL

    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011) 133:(5) pp. 1310-1316.

  • Full backbone assignment and dynamics of the intrinsically disordered dehydrin ERD14.

    Szalainé Ágoston B , Kovács D , Tompa P , Perczel A

    BIOMOLECULAR NMR ASSIGNMENTS (2011) 5:(2) pp. 189-193. Kivonat

  • New Small-Size Antifungal Peptides: Design, Synthesis and Antifungal Activity

    Garro AD , Garibotto FM , Rodriguez AM , Raimondi M , Zacchino SA , Perczel A , Somlai C , Penke B , Enriz RD

    LETTERS IN DRUG DESIGN AND DISCOVERY (2011) 8:(6) pp. 562-567. Kivonat

  • Penetratin analogues acting as antifungal agents

    Francisco M Garibotto , Adriana D. Garro , Ana M. Rodríguez , Marcela Raimondi , Susana A. Zacchino , András Perczel , Csaba Somlai , Botond Penke , Ricardo D. Enriz

    Eur. J. Med. Chem. (2011) 46(1):370-377. | DOI: 10.1016/j.ejmech.2010.10.025. | PMID: 21093119 Kivonat

  • Local Protein Backbone Folds Determined by Calculated NMR Chemical Shifts

    András Czajlik , Ilona Hudáky , András Perczel

    JOURNAL OF COMPUTATIONAL CHEMISTRY (2011) 32:(16) pp. 3362-3382.

2010

  • Interaction between separated consecutive complement control modules of human C1r: implications for dimerization of the full-length protease.

    András Láng , Balázs Major , Katalin Szilágyi , Zoltán Gáspári , Péter Gál , Péter Závodszky , András Perczel

    FEBS Lett. (2010) 584(22):4565-4569. | DOI: 10.1016/j.febslet.2010.10.033 | PMID: 20970424 Kivonat

  • Protein dynamics as reported by NMR

    Zoltán Gáspári , András Perczel

    Annu. Rep. NMR (2010) Vol. 71, in press

  • Detecting atypical examples of known domain types by sequence similarity searching: The SBASE domain library approach

    Somdutta Dhir , Mircea Pacurar , Dino Franklin , Zoltán Gáspári , Attila Kertész-Farkas , Frank Eisenhaber , Sándor Pongor

    Curr. Protein Pept. Sci. (2010) 11(7):538-549. | DOI: 10.2174/138920310794109148 | PMID: 20887262 Kivonat

  • Aromatic stacking between nucleobase and enzyme promotes phosphate ester hydrolysis in dUTPase

    Ildikó Pécsi , Ibolya Leveles , Veronika Harmat , Beáta G. Vértessy , Judit Tóth

    Nucleic Acids Res. (2010) 38(20):7179-7186. | DOI: 10.1093/nar/gkq584 | PMID: 20601405 Kivonat

  • CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data

    András Perczel , Annamária F. Ángyán , Balázs Szappanos , Zoltán Gáspári

    BMC Structural Biology (2010) 10:39. | DOI: 10.1186/1472-6807-10-39. | PMID: 21034466 Kivonat

  • Intermodule cooperativity in the structure and dynamics of consecutive complement control modules in human C1r

    András Láng , Katalin Szilágyi , Balázs Major , Péter Gál , Péter Závodszky , András Perczel

    FEBS J. (2010) 277(19):3986-3998. | DOI: 10.1111/j.1742-4658.2010.07790.x | PMID: 20796027 Kivonat

  • Structure and mechanism of calmodulin binding to a signaling sphingolipid reveal new aspects of lipid-protein interactions

    Erika Kovács , Veronika Harmat , Judit Tóth , Beáta G. Vértessy , Károly Módos , József Kardos , Károly Liliom

    FASEB J. (2010) 24(10):3829-39. | DOI: 10.1096/fj.10-155614 | PMID: 20522785 Kivonat

  • New antifungal peptides. Synthesis, bioassays and initial structure prediction by CD spectroscopy

    Mónica S. Olivella , Ana M. Rodríguez , Susana A. Zacchino , Csaba Somlai , Botond Penke , Viktor Farkas , András Perczel , Ricardo D. Enriz

    Bioorg. Med. Chem. Lett. (2010) 20(16):4808-4011. | DOI: 10.1016/j.bmcl.2010.06.105. | PMID: 20620056 Kivonat

  • Extended apolar β-peptide foldamers: the role of axis chirality on β-peptide sheet stability

    Gábor Pohl , Tamás Beke , Imre G. Csizmadia , András Perczel

    J. Phys. Chem. B (2010) 114(29):9338-9348. | DOI: 10.1021/jp100955u. | PMID: 20666395 Kivonat

  • Direct contacts between conserved motifs of different subunits provide major contribution to active site organization in human and mycobacterial dUTPases

    Enikő Takács , Ibolya Leveles , Veronika Harmat , Anna Lopata , Judit Tóth , Beáta G. Vértessy

    FEBS Lett. (2010) 584(14):3047-54. | DOI: 10.1016/j.febslet.2010.05.018 | PMID: 20493855 Kivonat

  • Folded-unfolded cross-predictions and protein evolution: the case study of coiled-coils

    Balázs Szappanos , Dániel Süveges , László Nyitray , András Perczel , Zoltán Gáspári

    FEBS Lett. (2010) 584(8):1623-1627. | DOI: 10.1016/j.febslet.2010.03.026. | PMID: 20303956 Kivonat

  • Stability of the hydration layer of tropocollagen: A QM study

    Villő K. Pálfi , András Perczel

    J. Comput. Chem. (2010) 31(4):764-777. | DOI: 10.1002/jcc.21361. | PMID: 19569200 Kivonat

  • Reconciling the lock-and-key and dynamic views of canonical serine protease inhibitor action

    Zoltán Gáspári , Péter Várnai , Balázs Szappanos , András Perczel

    FEBS Lett. (2010) 584(1):203-206. | DOI: 10.1016/j.febslet. | PMID: 19932101 Kivonat

  • Probing dynamic protein ensembles with atomic proximity measures

    Zoltán Gáspári , Annamária F. Ángyán , Somdutta Dhir , Dino Franklin , András Perczel , Alessandro Pintar , Sándor Pongor

    Curr. Protein Pept. Sci. (2010) 11(7):515-522. | DOI: 10.2174/138920310794109201 | PMID: 20887264 Kivonat

2009

  • Biophysical studies of the membrane location of the voltage-gated sensors in the HsapBK and KvAP K+ channels.

    Henrik Biverståhl , Jesper Lind , Andrea Bodor , Lena Mäler

    Biochem. Biophys. Acta (2009) 1788:1976-1986 Kivonat

  • Characterization of a novel acylaminoacyl peptidase with hexameric structure and endopeptidase activity

    Zoltán Szeltner , András L. Kiss , Klarissza Domokos , Veronika Harmat , Gábor Náray-Szabó , László Polgár

    Biochem. Biophys. Acta (2009) 1794:1204-1210 Kivonat

  • MASP-1, a Promiscuous Complement Protease: Structure of Its Catalytic Region Reveals the Basis of Its Broad Specificity

    József Dobó , Veronika Harmat , László Beinrohr , Edina Sebestyén , Péter Závodszky , Péter Gál

    J. Immunol. (2009) 183:1207-1214. Kivonat

  • Theoretical aspects of molecular recognition.

    Veronika Harmat , Gábor Náray-Szabó

    Croat. Chem. Acta (2009) 82:277-282.

  • Chiral and achiral fundamental conformational building units of β-peptides: a matrix isolation conformational study on Ac-β-HGly-NHMe and Ac-β-HAla-NHMe

    Tamás Beke , Csaba Somlai , Gábor Magyarfalvi , András Perczel , György Tarczay

    J. Phys. Chem. B (2009) 113:7918-7926 Kivonat

  • The inherent flexibility of peptides and protein fragments quantitized by CD in conjunction with CCA+

    Imre Jákli , András Perczel

    J. Pept. Sci. (2009) 15:738-752. Kivonat

  • Combined NMR three-bond scalar coupling measurements and QM calculations to calculate OH-rotamer equilibrium of polyalcohols

    Katalin E. Kövér , Tamás Beke , András Lipták , András Perczel

    J. Comput. Chem. (2009) 30:540-550. Kivonat

  • Functional Aspects of the Solution Structure and Dynamics of PAF, a Highly Stable Antifungal Protein from Penicillium chrysogenum

    Gyula Batta , Herbert Lindner , István Pócsi , Nikoletta Hegedüs , Éva Leiter , Andrea Eigentler , Anil Kumar Chhillar , Lydia Kaiserer , Bettina Sarg , Ulrike Binder , Katalin E. Kövér , Szabolcs Sándor , Zoltán Gáspári , Teréz Barna , Florentine Marx

    FEBS J. (2009) 276:2875-2890. Kivonat

  • Charged single α-helix: a versatile protein structural motif

    Dániel Süveges , Zoltán Gáspári , Gábor Tóth , László Nyitray

    Proteins (2009) 74:905-916. Kivonat

2008

  • Prolyl oligopeptidase inhibition by N-acyl-pro-pyrrolidine-type molecules

    Károly Kánai , Péter Arányi , Zsolt Böcskei , György Ferenczy , Veronika Harmat , Kálmán Simon , Sándor Bátori , Gábor Náray-Szabó , István Hermecz

    J Med Chem. (2008) 51(23):7514-7522. | DOI: 10.1021/jm800944x | PMID: 19006380 Kivonat

  • Purification, crystallization and preliminary X-ray analysis of human mannose-binding lectin-associated serine protease-1 (MASP-1) catalytic region

    József Dobó , Veronika Harmat , Edina Sebestyén , László Beinrohr , Péter Závodszky , Péter Gál

    Acta Crystallogr Sect F Struct Biol Cryst Commun. (2008) 64(Pt 9):781-784. | DOI: 10.1107/S174430910802294X | PMID: 18765903 Kivonat

  • Structural and kinetic contributions of the oxyanion binding site to the catalytic activity of acylaminoacyl peptidase

    András L. Kiss , Anna Palló , Gábor Náray-Szabó , Veronika Harmat , László Polgár

    J Struct Biol. (2008) 162(2):312-323. | DOI: 10.1016/j.jsb.2008.01.012 | PMID: Kivonat

  • Cooperation between a salt bridge and the hydrophobic core triggers fold stabilization in a Trp-cage miniprotein

    Péter Hudáky , Pál Stráner , Viktor Farkas , Györgyi Váradi , Gábor Tóth , András Perczel

    Biochemistry (2008) 47(3):1007-1016. DOI: 10.1021/bi701371x PMID: 18161949 Kivonat

  • Local structural preferences of calpastatin, the intrinsically unstructured protein inhibitor of calpain

    Róbert Kiss , Dénes Kovács , Péter Tompa , András Perczel

    Biochemistry (2008) 47:6936-6945. Kivonat

  • A redesigned genetic code for selective labeling in protein NMR

    Zoltán Gáspári , Gábor Pál , András Perczel

    BioEssays (2008) 30:772-780. Kivonat

  • Structure and stability of short β-peptide nanotubes: a non-natural representative of collagen?

    András Czajlik , Tamás Beke , Andrea Bottoni , András Perczel

    J. Phys. Chem. B (2008) 112:7956-7966. Kivonat

  • Intrinsic structural disorder of DF31, a Drosophila protein of chromatin decondensation and remodeling activities

    Edit Szőllősi , Mónika Bokor , Andrea Bodor , András Perczel , Éva Klement , Katalin F. Medzihraszky , Kálmán Tompa , Péter Tompa

    J. Proteome Res. (2008) 7:2291-2299. Kivonat

  • Calcium-induced tripartite binding of intrinsically disordered calpastatin to its cognate enzyme, calpain

    Róbert Kiss , Zoltán Bozóky , Dénes Kovács , Gergely Róna , Péter Friedrich , Péter Dvortsák , Rudinger Weisemann , Péter Tompa , András Perczel

    FEBS Lett. (2008) 582:2149-2154. Kivonat

  • Antibody recognition and conformational flexibility of a plaque-Specific β-amyloid epitope modulated by non-native peptide flanking regions

    Marilena Manea , Michael Przybylski , András Perczel , Ödön Farkas , Anikó Horváth , Andrea Bodor , Kata Horváti , Gábor Mező , Adrián Kalászi , Ferenc Hudecz

    J. Med. Chem. (2008) 51:1150-1161 Kivonat

  • The mechanism of the reverse recovery step, phosphate release, and actin activation of Dictyostelium myosin II

    Máté Gyimesi , Bálint Kintses , Andrea Bodor , András Perczel , Stefan Fischer , Clive R. Bagshaw , András Málnási-Csizmadia

    J. Biol. Chem. (2008) 283:8153-8163. Kivonat

  • A theoretical comparison of self-assembling α- and β-peptide nanostructures: toward design of β-barrel frameworks.

    Tamás Beke , András Czajlik , Balázs Bálint , András Perczel

    ACS Nano (2008) 2:545-553. Kivonat

  • How stable is a collagen triple helix? An ab initio study on various collagen and beta-sheet forming sequences

    Villő Pálfi , András Perczel

    J. Comput. Chem. (2008) 29:1374-1386 Kivonat

  • A matrix isolation study on Ac-L-Pro-NH2, a frequent structural element of β- and γ-turns of peptides and proteins

    Gábor Pohl , András Perczel , Elemér Vass , Gábor Magyarfalvi , György Tarczay

    Tetrahedron (2008) 64(9):2126-2133. Kivonat

  • Distribution and evolution of short tandem repeats in closely related bacterial genomes

    Edit Kassai-Jáger , Csaba Ortutay , Gábor Tóth , Tibor Vellai , Zoltán Gáspári

    Gene (2008) , 410(1):18-25. Kivonat

  • Fast protein fold estimation from NMR-derived distance restraints

    Annamária F. Ángyán , András Perczel , Sándor Pongor , Zoltán Gáspári

    Bioinformatics (2008) 24(2):272-275. Kivonat

  • The prolylproline unit in model peptides and in fragments from databases

    Ilona Hudáky , András Perczel

    Proteins (2008) 70(4):1389-1407. Kivonat

  • Revisiting the mechanism of the autoactivation of the complement protease C1r in the C1 complex: Structure of the active catalytic region of C1r

    József Kardos , Péter Závodszky , Yuji Goto , Gábor Náray-Szabó , László Gráf , Katalin Szilágyi , Orsolya Barabás , Anna Palló , Veronika Harmat , Péter Gál

    Mol. Immunol. (2008) 45(6):1752-1760 Kivonat

2007

  • Dead-end street of protein folding: thermodynamic rationale of amyloid fibril formation

    András Perczel , Péter Hudáky , Villő Pálfi

    J. Am. Chem. Soc. (2007) , 129(48):14959-14965 Kivonat

  • pKa optimized catalysis in serine proteinases, an ab initio study on the catalaytic His

    Péter Hudáky , András Perczel

    Int. J. Quantum Chem. (2007) 107(11):2178-2183 Kivonat

  • A matrix isolation study on Ac-Gly-NHMe and Ac-L-Alai-NHMe, the simplest chiral and achiral building blocks of peptides and proteins

    Gábor Pohl , András Perczel , Elemér Vass , Gábor Magyarfalvi , György Tarczay

    Phys. Chem. Chem. Phys. (2007) 9:4698-4708. Kivonat

  • Information accumulation in helical oligopeptide structures

    Béla Viskolcz , Szilárd N. Fejér , Svend J. Knak Jensen , András Perczel , Imre G. Csizmadia

    Chem. Phys. Lett. (2007) 450: 123-126. Kivonat

  • Quantum mechanical studies on the existence of a trigonal bipyramidal phosphorane intermediate in enzymatic phosphate ester hydrolysis

    Imre Berente , Tamás Beke , Gábor Náray-Szabó

    Theor. Chem. Acc. (2007) 118:129-134 Kivonat

  • Major human γ-aminobutyrate transporter: In silico prediction of substrate efficacy

    Anna Palló , Ákos Bencsura , László Héja , Tamás Beke , András Perczel , Julianna Kardos , Ágnes Simon

    Biochem. Biophy. Res. Commun. (2007) Kivonat

  • A new synthetic method for the preparation of star-shaped polyisobutylene with hyperbranched polystyrene core

    Gergely Kali , Márta Szesztay , Andrea Bodor , Béla Iván

    Macromol. Chem. Phys. (2007) 208: 1388-1393. Kivonat

  • Homogeneous gold-catalyzed hydrosilylation of aldehydes

    Diána Lantos , Marıa Contelb , Sergio Sanzb , Andrea Bodor , István T. Horváth

    J. Organomet. Chem. (2007) 692: 1799-1805 Kivonat

  • Imidazolium ionic liquids as solvents for cerium(IV)-mediated oxidation reactions

    Hasan Mehdi , Andrea Bodor , Diána Lantos , István T. Horváth , Dirk E. De Vos , Koen Binnemans

    J. Org. Chem. (2007) 72: 517-524. Kivonat

  • Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins

    Veronika Németh-Pongrácz , Emese Kónya , Katalin F. Medzihradszky , Éva Hunyadi-Gulyás , Éva Klement , Veronika Harmat , Maxim Petoukhov , Dmitri Svergun , Helena Zábranská , Michalea Rumlová , Iva Pichová , István Simon , Mónika Fuxreiter , Orsolya Barabás , Beáta G. Vértessy

    Nucleic Acids Res. (2007) , 35: 495-505. Kivonat

  • The acylaminoacyl peptidase from Aeropyrum pernix K1 thought to be an exopeptidase displays endopeptidase activity

    András L. Kiss , Balázs Hornung , Krisztina Rádi , Zsolt Gengeliczki , Bálint Sztáray , Tünde Juhász , Zoltán Szeltner , Veronika Harmat , László Polgár

    J. Mol. Biol. (2007) 368: 509-520. Kivonat

  • C1 inhibitor serpin domain structure reveals the likely mechanism of heparin potentiation and conformational disease

    László Beinrohr , Veronika Harmat , József Dobó , Zsolt Lörincz , Péter Gál , Péter Závodszky

    J. Biol. Chem. (2007) 282: 21100-21109. Kivonat

  • Divergent microsatellite evolution in the human and chimpanzee lineages

    Zoltán Gáspári , Csaba Ortutay , Gábor Tóth

    FEBS Lett. (2007) 581(13):2523-2526. Kivonat

  • When the surface tells what lies beneath: Combinatorial phage-display mutagenesis reveals complex network of surface-core interactions in the pacifastin protease inhibitor family

    Borbála Szenthe , András Patthy , Zoltán Gáspári , Adrienna Katalin Kékesi , László Gráf , Gábor Pál

    J. Mol. Biol. (2007) 370(1):63-79. Kivonat

  • Structure, enzymatic stability and antitumor activity of sea lamprey GnRH-III and its dimer derivatives

    Gábor Mező , András Perczel , Michael Przybylski , Magdolna Kovács , Orsolya Csuka , Borbála Vincze , Marian Boldizsár , Bence Kapuvári , Andrea Bodor , Elemér Vass , Zsuzsa Majer , Viktor Farkas , Annamária Jakab , Marilena Manea , András Czajlik , Ferenc Hudecz

    Peptides (2007) 28(4): 806-820 Kivonat

  • Determining the molecular basis for the pH-dependent interaction between the Link module of human TSG-6 and hyaluronan

    Charles D. Blundell , David J. Mahoney , Martin R. Cordell , Andrew Almond , Jan D. Kahmann , András Perczel , Jonathan D. Taylor , Iain D. Campbell , Anthony J. Day

    J. Biol. Chem. (2007) , 282:12976-12988. Kivonat

  • Modeling-based characterization of the elicitor function of amino acid 461 of Cucumber mosaic virus 1a protein in the hypersensitive response

    Katalin Salánki , Ákos Gellért , Gábor Náray-Szabó , Ervin Balázs

    Virology (2007) 358: 109-118. Kivonat

  • A combined electronegativity equalization and electrostatic potential fit method for the determination of atomic point charges

    Imre Berente , Eszter Czinki , Gábor Náray-Szabó

    J. Comput. Chem. (2007) 28: 1936-1942. Kivonat

  • A Protein Classification Benchmark collection for machine learning

    Paolo Sonego , Mircea Pacurar , Somdutta Dhir , Attila Kertész-Farkas , András Kocsor , Zoltán Gáspári , Jack Leunissen , Sándor Pongor

    Nucleic Acids Res. (2007) , 35(Database issue):D232-D236. Kivonat

  • Freezing effect on chirality generation of DL-alanine-N-carboxy-anhydride oligomerization in aqueous solution

    Tamás Vajda , Miklós Hollósi

    Protein Pept. Lett. (2007) 14(9):854-858. | DOI: http://dx.doi.org/10.2174/092986607782110275 | PMID: 18045225 Kivonat

2006

2005

  • Structural evidence for non-canonical binding of Ca2+ to a canonical EF-hand of a conventional myosin

    Judit É. Debreczeni , László Farkas , Veronika Harmat , Csaba Hetényi , István Hajdú , Péter Závodszky , László Nyitray , Kazuhiro Kohama

    J. Biol. Chem. (2005) 280(50):41458-41464. | PMID: 16227209 Kivonat

  • A true autoactivating enzyme. Structural insight into mannose-binding lectin-associated serine protease-2 activations

    Péter Gál , Andrea Kocsis , Tünde Bián , Veronika Harmat , László Barna , Géza Ambrus , Barbara Végh , Robert B. Sim , Péter Závodszky , Gábor Náray-Szabó

    J. Biol. Chem. (2005) 280(39):33435-33444. | PMID: 16040602 Kivonat

  • The structure of the complex of calmodulin with KAR-2: a novel mode of binding explains the unique pharmacology of the drug

    István Horváth , Veronika Harmat , András Perczel , Villő Pálfi , László Nyitray , Attila Nagy , Emma Hlavanda , Gábor Náray-Szabó , Judit Ovádi

    J. Biol. Chem. (2005) 280(9):8266-8274. | PMID: 15596444 Kivonat

  • Peptide models XLV: Conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins

    András Láng , Imre G. Csizmadia , András Perczel

    Proteins (2005) 58(3):571-588. | DOI: 10.1002/prot.20307 | PMID: 15616985 Kivonat

  • Investigation of penetratin peptides. Part 2. In vitro uptake of penetratin and two of its derivatives

    Tamás Letoha , Ferenc Peták , András Czajlik , Ernő Duda , Erzsébet Kusz , Hristos Glavinas , Zsolt Venkei , Csaba Somlai , Szilvia Gaál , Botond Penke

    J. Pept. Sci. (2005) 11:805-811. Kivonat

  • Efficient recognition of folds in protein 3-D structures by the improved PRIDE algorithm.

    Zoltán Gáspári , Kristian Vlahovicek , Sándor Pongor

    Bioinformatics (2005) 21:3322-3323. Kivonat

  • Toward direct determination of conformations of protein building units from multidimensional NMR experiments VI. Chemical shift analysis of His to gain 3D structure and protonation state information

    Péter Hudáky , András Perczel

    J. Comput. Chem. (2005) 26:1307-1317. Kivonat

  • Structure and stability of β-pleated sheets.

    András Perczel , Zoltán Gáspári , Imre G. Csizmadia

    J. Comput. Chem. (2005) 26:1155-1168. Kivonat

  • Extended intermolecular interactions in a serine protease canonical inhibitor complex account for strong and highly specific inhibition

    Krisztián Fodor , Veronika Harmat , Csaba Hetényi , József Kardos , József Antal , András Perczel , András Patthy , Gergely Katona , László Gráf

    J. Mol. Biol. (2005) 350:156-169. Kivonat

  • Solution state conformation and degradation of cyclopeptides containing an NGR motif

    Anna K. Füzéry , Nikolett Mihala , Pál Szabó , András Perczel , Raffaella Giavazzi , Helga Süli-Vargha

    J. Pept. Sci. (2005) 11(1):53-59. Kivonat

2004

2003

  • A conformational comparison of N- and C-protected methionine and N- and C-protected homocysteine

    András Láng , Krisztina György , Imre G. Csizmadia , András Perczel

    J. Mol. Struct. (THEOCHEM) (2003) 666–667:219–241. | http://dx.doi.org/10.1016/j.theochem.2003.08.029 Kivonat

  • Lipophilicity of aminopyridazinone regioisomers

    Massud A. S. Anwair , László Károlyházy , Diána Szabó , Balázs Balogh , István Kövesdi , Veronika Harmat , Judit Krenyácz , Ákos Gellért , Krisztina Takács-Novák , Péter Mátyus

    J Agric Food Chem. (2003) 51(18):5262-5270. | DOI: 10.1021/jf0343938 | PMID: 12926868 Kivonat

  • Membrane translocation of penetratin and its derivatives in different cell lines.

    Tamás Letoha , Sándor Gaál , Csaba Somlai , András Czajlik , András Perczel , Botond Penke

    J. Mol. Recognit. (2003) 16(5):272-279. Kivonat

  • Synthesis, solution structure analysis and antibody binding of cyclic epitope peptides from glycoprotein D of Herpes simplex virus type I.

    Gitta Schlosser , Sytske Welling-Wester , Szilvia Bõsze , András Perczel , Matty Feijlbrief , Zsuzsa Majer , Elemér Vass , Róbert Kiss , Gábor Mező , Ferenc Hudecz

    Biophys. Chem. (2003) 106(2):155-171. Kivonat

  • Intrinsically stable secondary structure elements of proteins: a comprehensive study of folding units of proteins by computation and by analysis of data determined by X-ray crystallography

    András Perczel , Imre Jákli , Imre G. Csizmadia

    Chem. Eur. J. (2003) 9(21): 5332-5342 Kivonat

  • Vicinal disulfide turns

    Oliviero Carugo , Masa Cemazar , Sotir Zahariev , Ilona Hudáky , Zoltán Gáspári , András Perczel , Sándor Pongor

    Protein Eng. (2003) 16(9): 637-639. Kivonat

  • Structure-oriented rational design of chymotrypsin inhibitor models

    Zoltán Mucsi , Zoltán Gáspári , György Orosz , András Perczel

    Protein Eng. (2003) 16(9): 673-681. Kivonat

  • Toward direct determination of conformations of protein building units from multidimensional NMR experiments. V. NMR chemical shielding analysis of N-formyl-serinamide, a model for polar side-chain containing peptides

    András Perczel , Anna K. Füzéry , Attila G. Császár

    J. Comput. Chem. (2003) 24(10): 1157-1171. Kivonat

  • A theoretical case study of type I and type II β-turns

    Eszter Czinki , Attila G. Császár , András Perczel

    Chem Eur J (2003) 9(5): 1182-1191 Kivonat

  • Cryo-bioorganic chemistry: freezing effect on stereoselection of L- and DL- alanine-N-carboxyanhydride oligomerization in dioxane solution

    Tamás Vajda , Miklós Hollósi , Marianna Mák

    CRYOLETTERS (2003) CRYOLETTERS 24: 253-259 | PMID: 12955172 Kivonat

2002

2001

  • Cryo-bioorganic chemistry: freezing effect on stereoselection of L- and DL-leucine cooligomerization in aqueous solution

    Tamás Vajda , Miklós Hollósi

    Cell. Mol. Life Sci. (2001) 58: 343-346 | 11289315 Kivonat

  • Peptide models XXXI. Conformational properties of hydrophobic residues shaping the core of proteins. An ab initio study of N-formyl-l-valinamide and N-formyl-L-phenyalaninamide.

    Péter Hudáky , Imre Jákli , Attila G. Császár , András Perczel

    J. Comput. Chem. (2001) 22: 732-751. Kivonat

  • α- and 310 -helix interconversion: A quantum-chemical study on polyalanine systems in the gas phase and in aqueous solvent.

    Igor A. Topol , Stanley K. Burt , Eugen Deretey , Ting-Hua Tang , András Perczel , Alexander Rashin , Imre G. Csizmadia

    J. Am. Chem. Soc. (2001) 123: 6054-6060. Kivonat

  • Toward direct determination of conformations of protein building units from multidimensional NMR experiments part II: A theoretical case study of formyl-L-valine amide.

    András Perczel , Attila G. Császár

    Chem Eur J (2001) 7: 1069-1083. Kivonat

2000

  • A new potent calmodulin antagonist with arylalkylamine structure: crystallographic, spectroscopic and functional studies

    Veronika Harmat , Zsolt Böcskei , Gábor Náray-Szabó , Imre Bata , Andrea S. Csutor , István Hermecz , Péter Arányi , Beáta Szabó , Károly Liliom , Beáta G. Vértessy

    J. Mol. Biol. (2000) 297(3):747-755. | DOI: 10.1006/jmbi.2000.3607 | PMID: 10731425 Kivonat

  • Toward direct determination of conformations of protein building units from multidimensional NMR experiments I. A theoretical case study of For-Gly-NH2 and For-L-Ala-NH2.

    András Perczel , Attila G. Császár

    J. Comput. Chem. (2000) 21: 882-900. Kivonat

  • Deciphering factors which determine the Ramachandran surface of Peptides. The aplication of isodesmic surfaces ΔEID(φ,ψ) to analyze the contribution of rotating moieties to the shape of potential energy surfaces.

    András Perczel , Péter Hudáky , Imre G. Csizmadia

    J. Mol. Struct. (THEOCHEM) (2000) 500: 59-96. Kivonat

1998

  • Simultaneous binding of drugs with different chemical structures to Ca2+-calmodulin: crystallographic and spectroscopic studies

    Beáta G. Vértessy , Veronika Harmat , Gábor Náray-Szabó , Zsolt Böcskei , Ferenc Orosz , Judit Ovádi

    Biochemistry (1998) 37(44):15300-15310. | DOI: 10.1021/bi980795a | PMID: 9799490 Kivonat

1996

1995

  • Searching for the simplest structural units to describe the 3-dimensional structure of proteins (Review).

    András Perczel , Imre G. Csizmadia

    Int..Rev. Phys. Chem. (1995) 14: 127-168.

1993

  • Peptide models. 6. New beta-turn conformations from ab initio calculations confirmed by X-ray data of proteins.

    András Perczel , Michael A. McAllister , Pál Császár , Imre G. Csizmadia

    J. Am. Chem. Soc. (1993) 115: 4849-4858.

  • Peptide models. 3. Conformational potential-energy hypersurface of formyl-L-valinamide.

    Wladia Viviani , Jean Louis Rivail , András Perczel , Imre G. Csizmadia

    J. Am. Chem. Soc. (1993) 115: 8321-8329.

1991

  • Peptide models. 1. Topology of selected peptide conformational potential-energy surfaces (Glycine and alanine derivatives).

    András Perczel , János G. Ángyan , Márton Kajtár , Wladia Viviani , Jean Louis Rivail , John Frank Marcoccia , Imre G. Csizmadia

    J. Am. Chem. Soc. (1991) 113: 6256-6265.

0

  • Chemicalstability and structure –activity relationship studies of novelcyclic NGR peptides.

    MEZŐ G , ENYEDI K , CZAJLIK A , SZABÓ I , HEGEDÜS R , MAJER ZS , LAJKÓ E , KŐHIDA L , Perczel A

    University of Athens, Laboratory of Organic Chemistry, (0) 2012. pp. 588-589.<br>(ISBN:978-960-466-121-3)