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Target-templated Construction of Functional Proteomimetics Using Photo-foldamer Libraries
Edit Wéber
, Péter Ábrányi-Balogh
, Tamas A. Martinek
, Bence Nagymihály
, Dóra Karancsiné Menyhárd
, Nikolett Péczka
, Márton Gadanecz
, Gitta Schlosser
, Zoltán Orgován
, Ferenc Bogár
, Dávid Bajusz
, Gábor Kecskeméti
, Zoltán Szabó
, Éva Bartus
, Attila Tököli
, Gábor K. Tóth
, Tibor V. Szalai
, Tamás Takács
, Elvin de Araujo
, László Buday
, András Perczel
, György M. Keserű
Angew. Chem. Int. Ed.
(2024)
e202410435 I DOI: 10.1002/anie.202410435
Kivonat
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Opening Amyloid-Windows to the secondary structure of proteins: The amyloidogenecity increases tenfold inside beta-sheets
Kristóf Takács
, Bálint Varga
, Viktor Farkas
, András Perczel
, Vince Grolmusz
Computers in Biology and Medicine
(2024)
179: 108863
Kivonat
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Solvent induced amyloid polymorphism and the uncovering of the elusive class 3 amyloid topology
Zsolt Dürvanger
, Fruzsina Bencs
, Dóra K. Menyhárd
, Dániel Horváth
, András Perczel
Communications Biology
(2024)
7: 968
Kivonat
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Mapping protein binding sites by photoreactive fragment pharmacophores
Péter Ábrányi-Balogh
, Dávid Bajusz
, Zoltán Orgován
, Aaron B. Keeley
, László Petri
, Nikolett Péczka
, Tibor Viktor Szalai
, Gyula Pálfy
, Márton Gadanecz
, Emma K. Grant
, Tímea Imre
, Tamás Takács
, Ivan Ranđelović
, Marcell Baranyi
, András Marton
, Gitta Schlosser
, Qirat F. Ashraf
, Elvin D. de Araujo
, Tamás Karancsi
, László Buday
, József Tóvári
, András Perczel
, Jacob T. Bush
, György M. Keserű
Communications Chemistry
(2024)
7, 168 I DOI: https://doi.org/10.1038/s42004-024-01252-w
Kivonat
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Contribution of Noncovalent Recognition and Reactivity to the Optimization of Covalent Inhibitors: A Case Study on KRasG12C
Nikolett Péczka
, Ivan Ranđelović
, Zoltán Orgován
, Noémi Csorba
, Attila Egyed
, László Petri
, Péter Ábrányi-Balogh
, Márton Gadanecz
, András Perczel
, József Tóvári
, Gitta Schlosser
, Tamás Takács
, Levente M. Mihalovits
, György G. Ferenczy
, László Buday
, György M. Keserű
ACS Chem. Biol.
(2024)
19, 8, 1743–1756 I DOI: https://doi.org/10.1021/acschembio.4c00217
Kivonat
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Dynamically encoded reactivity of Ras enzymes: opening new frontiers for drug discovery
Gyula Pálfy
, Dóra K. Menyhárd
, András Perczel
Cancer and Metastasis Reviews
(2024)
doi.org/10.1007/s10555-020-09917-3
Kivonat
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Neighbor effect on conformational spaces of alanine residue in azapeptides
Ho-Jin Lee
, Shi-Wei Liu
, Máté Sulyok-Eiler
, Veronika Harmat
, Viktor Farkas
, Zoltán Bánóczi
, Mouna El Khabchi
, Hua-Jun Shawn Fan
, Kimihiko Hirao
, Jong-Won Song
Heliyon
(2024)
10 (12), e33159 I DOI: https://doi.org/10.1016/j.heliyon.2024.e33159
Kivonat
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LoCoHD: a metric for comparing local environments of proteins
Zsolt Fazekas
, Dóra K. Menyhárd
, András Perczel
Nature Communications
(2024)
15, 4029 I DOI: https://doi.org/10.1038/s41467-024-48225-0
Kivonat
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Revisiting Hafner’s Azapentalenes: The Chemistry of 1,3-Bis(dimethylamino)-2-azapentalene
Enikő Meiszter
, Tamás Gazdag
, Péter J. Mayer
, Attila Kunfi
, Tamás Holczbauer
, Máté Sulyok-Eiler
, Gábor London
J. Org. Chem.
(2024)
89 (9), 5941-5951 | DOI: 10.1021/acs.joc.3c02564
Kivonat
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Unveiling the Oxazolidine Character of Pseudoproline Derivatives by Automated Flow Peptide Chemistry
Szebasztián Szaniszló
, Antal Csámpai
, Dániel Horváth
, Richárd Tomecz
, Viktor Farkas
, András Perczel
International Journal of Molecular Sciences
(2024)
25(8), 4150
Kivonat
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Influence of Aza-Glycine Substitution on the Internalization of Penetratin
Karima Tarchoun
, Dóra Soltész
, Viktor Farkas
, Ho-Jin Lee
, Ildikó Szabó
, Zoltán Bánóczi
Pharmaceutics
(2024)
16(4), 477
Kivonat
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Synthesis of small protein domains by automated flow chemistry
Kristóf Ferentzi
, Dóra Nagy-Fazekas
, Viktor Farkas
, András Perczel
Reaction Chemistry & Engineering
(2024)
9, 58-69
Kivonat
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Amide isomerization pathways: Electronic and structural background of protonation- and deprotonation-mediated cis-trans interconversions
Ádám A. Kelemen
, András Perczel
, Dániel Horváth
, Imre Jákli
J. Chem. Phys.
(2023)
159 (15): 154301. | DOI: https://doi.org/10.1063/5.0165772
Kivonat
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Design and Characterization of a Multistage Peptide-Based Vaccine Platform to Target Mycobacterium tuberculosis Infection
Chiara Bellini
, Emil Vergara
, Fruzsina Bencs
, Kinga Fodor
, Szilvia Bõsze
, Denis Krivić
, Bernadett Bacsa
, Sára Eszter Surguta
, József Tóvári
, Rajko Reljic
, Kata Horváti
Bioconjugate Chemistry
(2023)
34(10): 1738–1753
Kivonat
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Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation
Dániel Horváth
, Zsolt Dürvanger
, Dóra K. Menyhárd
, Máté Sulyok-Eiler
, Fruzsina Bencs
, Gergő Gyulai
, Péter Horváth
, Nóra Taricska
, András Perczel
Nature Communications
(2023)
14, 4621 I https://doi.org/10.1038/s41467-023-40294-x
Kivonat
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NMR-Chemical-Shift-Driven Protocol Reveals the Cofactor-Bound, Complete Structure of Dynamic Intermediates of the Catalytic Cycle of Oncogenic KRAS G12C Protein and the Significance of the Mg2+ Ion
Márton Gadanecz
, Zsolt Fazekas
, Gyula Pálfy
, Dóra Karancsiné Menyhárd
, András Perczel
Int. J. Mol. Sci.
(2023)
24(15), 12101 I https://doi.org/10.3390/ijms241512101
Kivonat
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Inhibitor Design Strategy for Myostatin: Dynamics and Interaction Networks Define the Affinity and Release Mechanisms of the Inhibited Complexes
Dóra Nagy-Fazekas
, Zsolt Fazekas
, Nóra Taricska
, Pál Stráner
, Dóra Karancsiné Menyhárd
, András Perczel
Molecules
(2023)
28(15), 5655 | https://doi.org/10.3390/molecules28155655
Kivonat
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Crystal Nanoarchitectonics and Characterization of the Octahedral Iron(III)–Nitrate Complexes with Isomer Dimethylurea Ligands
Kende Attila Béres
, Zoltán Homonnay
, Laura Bereczki
, Zsolt Dürvanger
, Vladimir M. Petruševski
, Attila Farkas
, László Kótai
Crystals
(2023)
13(7), 1019 I DOI: https://doi.org/10.3390/cryst13071019 I ISSN 2073-4352
Kivonat
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Acetyl group for proper protection of β-sugar-amino acids used in SPPS
István Varga
, Viktória Goldschmidt Gőz
, István Pintér
, Antal Csámpai
, András Perczel
Amino Acids
(2023)
| doi: 10.1007/s00726-023-03278-1
Kivonat
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Improved Acylation of Pseudoproline: Masked Threonine in Flow Peptide Chemistry
Szebasztián Szaniszló
, Kristóf Ferentzi
, András Perczel
, Viktor Farkas
Organic Process Research & Development
(2023)
27(6): 1053-1060
Kivonat
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Effect of Substitution Degree and Homogeneity on Cyclodextrin-Ligand Complex Stability: Comparison of Fenbufen and Fenoprofen Using CD and NMR Spectroscopy
Márta Kraszni
, Ferenc Ágh
, Dániel Horváth
, Arash Mirzahosseini
, Péter Horváth
Int. J. Mol. Sci.
(2023)
24, 7544. I DOI: https://doi.org/10.3390/ijms24087544
Kivonat
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A Novel Fusion Protein System for the Production of Nanobodies and the SARS-CoV-2 Spike RBD in a Bacterial System
Dóra Nagy-Fazekas
, Pál Stráner
, Péter Ecsédi
, Nóra Taricska
, Adina Borbély
, László Nyitray
, András Perczel
Bioengineering
(2023)
10(3), 389 I DOI: 10.3390/bioengineering10030389
Kivonat
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Structures of calmodulin–melittin complexes show multiple binding modes lacking classical anchoring interactions
Zsolt Dürvanger
, Tünde Juhász
, Károly Liliom
, Veronika Harmat
J. Biol. Chem.
(2023)
299(4): 104596 I DOI: 10.1016/j.jbc.2023.104596
Kivonat
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Covalent fragment mapping of KRasG12C revealed novel chemotypes with in vivo potency
Zoltán Orgován
, Nikolett Péczka
, László Petri
, Péter Ábrányi-Balogh
, Ivan Ranđelović
, Szilárd Tóth
, Gergely Szakács
, Kinga Nyíri
, Beáta Vértessy
, Gyula Pálfy
, István Vida
, András Perczel
, József Tóvári
, György M. Keserű
European Journal of Medicinal Chemistry
(2023)
250, 115212, ISSN 0223-5234 I DOI: 10.1016/j.ejmech.2023.115212.
Kivonat
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Structural, Spectroscopic, and Thermal Decomposition Features of [Carbonatotetraamminecobalt(III)] Iodide—Insight into the Simultaneous Solid-Phase Quasi-Intramolecular Redox Reactions
Kende Attila Béres
, Fanni Szilágyi
, Zoltán Homonnay
, Zsolt Dürvanger
, Laura Bereczki
, László Trif
, Vladimir M. Petruševski
, Attila Farkas
, Niloofar Bayat
, László Kótai
Inorganics
(2023)
11(2):68. I DOI: https://doi.org/10.3390/inorganics11020068
Kivonat
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A carbapenem antibiotic inhibiting a mammalian serine protease: structure of the acylaminoacyl peptidase–meropenem complex
Anna J. Kiss-Szemán
, Luca Takács
, Zoltán Orgován
, Pál Stráner
, Imre Jákli
, Gitta Schlosser
, Simonas Masiulis
, Veronika Harmat
, Dóra K. Menyhárd
, András Perczel
Chemical Science
(2022)
13, 14264 - 14276 I DOI: 10.1039/D2SC05520A
Kivonat
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Comparative Study of the Solid-Liquid Interfacial Adsorption of Proteins in Their Native and Amyloid Forms
Ágnes Ábrahám
, Flavio Massignan
, Gergő Gyulai
, Miklós Katona
, Nóra Taricska
, Éva Kiss
Int. J. Mol. Sci.
(2022)
23(21), 13219 I DOI: 10.3390/ijms232113219
Kivonat
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D27-LIKE1 isomerase has a preference towards trans/cis and cis/cis conversions of carotenoids in Arabidopsis
Zsolt Gulyás
, Blanka Moncsek
, Kamirán Áron Hamow
, Pál Stráner
, Zoltán Tolnai
, Eszter Badics
, Norbert Incze
, Éva Darkó
, Valéria Nagy
, András Perczel
, László Kovács
, Vilmos Soós
The Plant Journal
(2022)
DOI: 10.1111/tpj.16017
Kivonat
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Synthesis, structure, and Mössbauer spectroscopic studies on the heat‑induced solid‑phase redox reactions of hexakis(urea‑O)iron(III) peroxodisulfate
Kende Attila Béres
, Zoltán Homonnay
, Berta Barta Holló
, Maria Gracheva
, Vladimir M. Petruševski
, Attila Farkas
, Zsolt Dürvanger
, László Kótai
Journal of Materials Research
(2022)
38, 1102–1118 I DOI: 10.1557/s43578-022-00794-w
Kivonat
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Succinct Amyloid and Nonamyloid Patterns in Hexapeptides
László Keresztes
, Evelin Szögi
, Bálint Varga
, Viktor Farkas
, András Perczel
, Vince Grolmusz
ACS Omega
(2022)
DOI: 10.1021/acsomega.2c02513
Kivonat
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Thermally Induced Solid-Phase Quasi-Intramolecular Redox Reactions of [Hexakis(urea-O)iron(III)] Permanganate: An Easy Reaction Route to Prepare Potential (Fe,Mn)Ox Catalysts for CO2 Hydrogenation
Kende Attila Béres
, Zoltán Homonnay
, Libor Kvitek
, Zsolt Dürvanger
, Martina Kubikova
, Veronika Harmat
, Fanni Szilágyi
, Zsuzsanna Czégény
, Péter Németh
, Laura Bereczki
, Vladimir M. Petruševski
, Mátyás Pápai
, Attila Farkas
, László Kótai
Inorg. Chem.
(2022)
61(36), 14403–14418 I DOI: 10.1021/acs.inorgchem.2c02265
Kivonat
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Synthesis of the extracellular domain of GLP-1R by chemical and biotechnological approaches
János Szolomajer
, Pál Stráner
, Zoltán Kele
, Gábor K. Tóth
, András Perczel
RSC Advances
(2022)
12: 24278-24287 | DOI: 10.1039/d2ra02784d
Kivonat
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Omicron Binding Mode: Contact Analysis and Dynamics of the Omicron Receptor-Binding Domain in Complex with ACE2
Zsolt Fazekas
, Dóra K. Menyhárd
, András Perczel
Journal of Chemical Information and Modelling
(2022)
DOI: 10.1021/acs.jcim.2c00397
Kivonat
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The Importance of Mg2+-Free State in Nucleotide Exchange of Oncogenic K-Ras Mutants
Gyula Pálfy
, Dóra K. Menyhárd
, Hanna Ákontz-Kiss
, István Vida
, Gyula Batta
, Orsolya Tőke
, András Perczel
Chemistry - A European Journal
(2022)
e202201449 I DOI: doi.org/10.1002/chem.202201449
Kivonat
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Cryo-EM structure of acylpeptide hydrolase reveals substrate selection by multimerization and a multi-state serine-protease triad
Anna J. Kiss-Szemán
, Pál Stráner
, Imre Jákli
, Naoki Hosogi
, Veronika Harmat
, Dóra K. Menyhárd
, András Perczel
Chemical Science
(2022)
DOI: 10.1039/d2sc02276a
Kivonat
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Synergy of protease-binding sites within the ecotin homodimer is crucial for inhibition of MASP enzymes and for blocking lectin pathway activation
Zoltán Attila Nagy
, Dávid Héja
, Dániel Bencze
, Bence Kiss
, Eszter Boros
, Dávid Szakács
, Krisztián Fodor
, Matthias Wilmanns
, Andrea Kocsis
, József Dobó
, Péter Gál
, Veronika Harmat
, Gábor Pál
J. Biol. Chem.
(2022)
298(6) 101985 I DOI: 10.1016/j.jbc.2022.101985
Kivonat
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Directed Evolution-Driven Increase of Structural Plasticity Is a Prerequisite for Binding the Complement Lectin Pathway Blocking MASP-Inhibitor Peptides
Zsolt Dürvanger
, Eszter Boros
, Zoltán Attila Nagy
, Rózsa Hegedüs
, Márton Megyeri
, József Dobó
, Péter Gál
, Gitta Schlosser
, Annamária F. Ángyán
, Zoltán Gáspári
, András Perczel
, Veronika Harmat
, Gábor Mező
, Dóra K. Menyhárd
, Gábor Pál
ACS Chem. Biol.
(2022)
17(4), 969–986 I DOI: 10.1021/acschembio.2c00114
Kivonat
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The Structure-Derived Mechanism of Box H/ACA Pseudouridine Synthase Offers a Plausible Paradigm for Programmable RNA Editing
Dóra Judit Kiss
, Julianna Oláh
, Gergely Tóth
, Máté Varga
, András Stirling
, Dóra K. Menyhárd
, György G. Ferenczy
ACS Catal.
(2022)
12 (5), 2756-2769 I DOI: 10.1021/acscatal.1c04870
Kivonat
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Application of Sugar Amino Acids: Flow chemistry used for α/β-chimera synthesis
Viktória Goldschmidt Gőz
, Kim Hoang Yen Duong
, Dániel Horváth
, Kristóf Ferentzi
, Viktor Farkas
, András Perczel
Eur. J. Org. Chem.
(2021)
6071–6083. | In memory of Ferenc Fülöp
Kivonat
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Solution Structure and Acid-Base Properties of Reduced α-Conotoxin MI
Zoltán Faragó
, Arash Mirzahosseini
, Dániel Horváth
, Tamás Pálla
, Péter Horváth
, András Perczel
, Béla Noszál
Chemistry & Biodiversity
(2021)
18, e21004 I DOI: https://doi.org/10.1002/cbdv.202100464
Kivonat
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Dynamic disorder in the high-temperature polymorph of bis[diamminesilver(I)] sulfate-reasons and consequences of simultaneous ammonia release from two different polymorphs
Laura Bereczki
, Lara Alexandre Fogaça
, Zsolt Dürvanger
, Veronika Harmat
, Katalin Kamarás
, Gergely Németh
, Berta Barta Holló
, Vladimir M. Petruševski
, Eszter Bódis
, Attila Farkas
, Imre Miklós Szilágyi
, László Kótai
Journal of Coordination Chemistry
(2021)
74:13, 2144-2162 | DOI: 10.1080/00958972.2021.1953489
Kivonat
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The Budapest Amyloid Predictor and Its Applications
László Keresztes
, Evelin Szögi
, Bálint Varga
, Viktor Farkas
, András Perczel
, Vince Grolmusz
Biomolecules
(2021)
11(4), 500 | DOI: 10.3390/biom11040500
Kivonat
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Bacterial fermentation and isotope labelling optimized for amyloidogenic proteins
István Vida
, Zsolt Fazekas
, Gergő Gyulai
, Dóra Nagy-Fazekas
, Gyula Pálfy
, Pál Stráner
, Éva Kiss
, András Perczel
Microbial Biotechnology
(2021)
14, 1107–1119. | https://doi.org/10.1111/1751-7915.13778
Kivonat
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Synthesis of chimera oligopeptide including furanoid ß-sugar amino acid derivatives with free OHs: mild but successful removal of the 1,2-O-isopropylidene from the building block
Duong Kim Hoang Yen
, Viktória Goldschmidt Gőz
, András Perczel
, István Pintér
Amino Acids
(2021)
53: 281–294 | DOI: 10.1007/s00726-020-02923-3
Kivonat
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Cost Effective Flow Peptide Synthesis: Metamorphosis of HPLC
Viktor Farkas
, Kristóf Ferentzi
, Kata Horváti
, András Perczel
Organic Process Research & Development
(2021)
25(2): 182-191
Kivonat
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Intrinsic structural disorder of proteins: from prediction to experimental identification
Andrea Bodor
Amino Acids, Peptides and Proteins
(2020)
https://doi.org/10.1039/9781788017008-00064
Kivonat
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Assessment of Tractable Cysteines for Covalent Targeting by Screening Covalent Fragments
László Petri
, Dr. Péter Ábrányi-Balogh
, Dr. Imre Tímea
, Dr. Gyula Pálfy
, Prof. Dr. András Perczel
, Dr. Damijan Knez
, Dr. Martina Hrast
, Dr. Martina Gobec
, Dr. Izidor Sosič
, Dr. Kinga Nyíri
, Prof. Dr. Beáta G. Vértessy
, Niklas Jänsch
, Charlotte Desczyk
, Prof. Dr. Franz‐Josef Meyer‐Almes
, Iza Ogris
, Dr. Simona Golič Grdadolnik
, Luca Giacinto Iacovino
, Prof. Dr. Claudia Binda
, Prof. Dr. Stanislav Gobec
, Prof. Dr. György M. Keserű
ChemBioChem
(2020)
https://doi.org/10.1002/cbic.202000700
Kivonat
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Structural impact of GTP binding on downstream KRAS signaling
Dóra K. Menyhárd
, Gyula Pálfy
, Zoltán Orgován
, István Vida
, György M. Keserű
, András Perczel
Chemical Science
(2020)
DOI: 10.1039/d0sc03441j
Kivonat
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Power of Pure Shift HαCα Correlations: A Way to Characterize Biomolecules under Physiological Conditions
Andrea Bodor
, Jens D. Haller
, Bouguechtouli Chafiaa
, Theillet Francois-Xavier
, László Nyitray
, Luy Burkhard
Analytical Chemistry
(2020)
https://doi.org/10.1021/acs.analchem.0c02182
Kivonat
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Interplay of Structural Disorder and Short Binding Elements in the Cellular Chaperone Function of Plant Dehydrin ERD14
Nikoletta Murvai
, Lajos Kalmár
, Bianka Szalainé Ágoston
, Beáta Szabó
, Ágnes Tantos
, György Csikós
, András Micsonai
, József Kardos
, Didier Vertommen
, Phuong N. Nguyen
, Nevena Hristozova
, András Láng
, Dénes Kovács
, László Buday
, Kyou-Hoon Han
, András Perczel
, Péter Tompa
Cells
(2020)
9(8), 1856 | doi: 10.3390/cells9081856
Kivonat
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Pseudouridylation defect due to DKC1 and NOP10 mutations causes nephrotic syndrome with cataracts, hearing impairment, and enterocolitis
Balogh Eszter
, Chandler Jennifer C.
, Varga Máté
, Tahoun Mona
, Karancsiné Menyhárd Dóra
, Schay Gusztáv
, Goncalves Tomas
, Hamar Renáta
, Légrádi Regina
, Szekeres Ákos
https://www.pnas.org
(2020)
https://doi.org/10.1073/pnas.2002328117
Kivonat
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Gas Sensing by Bacterial H-NOX Proteins: An MD Study
Rozza Ahmed M.
, Dóra K. Menyhárd
, Oláh Julianna
Molecules
(2020)
https://doi.org/10.3390/molecules25122882
Kivonat
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Tumor‐Suppressor p53TAD1–60 Forms a Fuzzy Complex with Metastasis‐Associated S100A4: Structural Insights and Dynamics by an NMR/MD Approach
Erika F. Dudás
, Gyula Pálfy
, Dóra K. Menyhárd
, Fanni Sebák
, Péter Ecsédi
, László Nyitray
, Andrea Bodor
ChemBioChem
(2020)
21 | doi.org/10.1002/cbic.202000348
Kivonat
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Podocin regulates the size of the glomerular pore
Kétszeri Máté
, Antal Violetta
, Schay Gusztáv
, Ungvári-Veres Anita
, Pászty Katalin
, Kellermayer Miklós
, Karancsiné Menyhárd Dóra
, Kálmán Tory
Nephrology Dialysis Transplantation
(2020)
https://doi.org/10.1093/ndt/gfaa140.MO032
Kivonat
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Tissue-Specific Requirement for the GINS Complex During Zebrafish Development
Varga Máté
, Csályi Kitti
, Bertyák István
, Karancsiné Menyhárd Dóra
, Poole Richard J.
, Cerveny Kara L.
, Kövesdi Dorottya
, Barátki Balázs
, Rouse Hannah
, Vad Zsuzsa
Frontiers in Cell and Developmental Biology
(2020)
https://doi.org/10.3389/fcell.2020.00373
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Structure Determination of the Transactivation Domain of p53 in Complex with S100A4 Using Annexin A2 as a Crystallization Chaperone
Péter Ecsédi
, Gergő Gógl
, Henrietta Hóf
, Bence Kiss
, Veronika Harmat
, László Nyitray
Structure
(2020)
28(8), 943-953.e4 | doi: 10.1016/j.str.2020.05.001
Kivonat
-
Configuration‐Controlled Crystal and/or Gel Formation of Protected d‐Glucosamines Supported by Promiscuous Interaction Surfaces and a Conformationally Heterogeneous Solution State
Anita Kapros
, Attila Balázs
, Veronika Harmat
, Adrienn Háló
, Lívia Budai
, István Pintér
, Dóra K. Menyhárd
, András Perczel
Chemistry—A European Journal
(2020)
26 | doi.org/10.1002/chem.202000882
Kivonat
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1H, 15N backbone assignment and comparative analysis of the wild type and G12C, G12D, G12V mutants of K‐Ras bound to GDP at physiological pH
Gyula Pálfy
, István Vida
, András Perczel
Biomolecular NMR Assignments
(2020)
14, 1-7 | doi.org/10.1007/s12104-019-09909-7
Kivonat
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Novel Polycondensed Partly Saturated β-Carbolines Including Ferrocene Derivatives: Synthesis, DFT-Supported Structural Analysis, Mechanism of Some Diastereoselective Transformations and a Preliminary Study of their In Vitro Antiproliferative Effects
Kinga Judit Fodor
, Dániel Hutai
, Tamás Jernei
, Angéla Takács
, Zsófia Szász
, Máté Sulyok-Eiler
, Veronika Harmat
, Rita Oláh Szabó
, Gitta Schlosser
, Ferenc Hudecz
, László Kőhidai
, Antal Csámpai
Molecules
(2020)
25(7), 1599 | doi: 10.3390/molecules25071599
Kivonat
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Anionic food color tartrazine enhances antibacterial efficacy of histatin-derived peptide DHVAR4 by fine-tuning its membrane activity
Maria Ricci
, Kata Horváti
, Tünde Juhász
, Imola Szigyártó
, György Török
, Fanni Sebák
, Andrea Bodor
, László Homolya
, Judit Henczkó
, Bernadett Pályi
, Tamás Mlinkó
, Judith Mihály
, Bilal Nizami
, Zihuayuan Yang
, Fengming Lin
, Xiaolin Lu
, Loránd Románszki
, Attila Bóta
, Zoltán Varga
, Szilvia Bõsze
, Ferenc Zsila
, Tamás Beke-Somfai
Quarterly Reviews of Biophysics
(2020)
53(5), 1-11 | DOI: 10.1017/S0033583520000013
Kivonat
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Compactness of Protein Folds Alters Disulfide‐Bond Reducibility by Three Orders of Magnitude: A Comprehensive Kinetic Case Study on the Reduction of Differently Sized Tryptophan Cage Model Proteins
Dániel Horváth
, Nóra Taricska
, Ernő Keszei
, Pál Stráner
, Viktor Farkas
, Gábor K. Tóth
, András Perczel
ChemBioChem
(2020)
21(5), 681-695 | doi.org/10.1002/cbic.201900470
Kivonat
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The route from the folded to the amyloid state: exploring the potential energy surface of a drug-like miniprotein
Nóra Taricska
, Dániel Horváth
, Dóra K. Menyhárd
, Hanna Ákontz-Kiss
, Masahiro Noji
, Masatomo So
, Yuji Goto
, Toshimichi Fujiwara
, András Perczel
Chemistry A European Journal
(2020)
26(9), 1968-1978 | doi.org/10.1002/chem.201903826
Kivonat
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Podocin Regulates the Nephrin-Nephrin Distance in the Glomerular Pore
Schay Gusztáv
, Antal Violetta
, Kétszeri Máté
, Csokay Katalin
, Kellermayer Miklós
, Dóra K. Menyhárd
, Kálmán Tory
Biophysical Journal
(2020)
DOI:https://doi.org/10.1016/j.bpj.2019.11.2889
Kivonat
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Peptide-bicelle interaction: Following variations in size and morphology by a combined NMR-SAXS approach
E. F. Dudás
, A. Wacha
, A. Bóta
, A. Bodor
Biochimica et Biophysica Acta (BBA) - Biomembranes
(2020)
doi.org/10.1016/j.bbamem.2019.183095
Kivonat
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Off-pathway 3D-structure provides protection against spontaneous Asn/Asp isomerization: shielding proteins Achilles heel
András Láng
, Imre Jákli
, Kata Nóra Enyedi
, Gábor Mező
, Dóra K. Menyhárd
, András Perczel
Quarterly Reviews of Biophysics
(2020)
53 | doi:10.1017/S003358351900009X
Kivonat
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Effect of podocin variants on the podocin-nephrin and nephrin-nephrin interaction
Antal Violetta
, Kétszeri Máté
, Gusztáv Schay
, Ungvári-Veres Anita
, Csokay Katalin
, Dóra K. Menyhárd
, Kálmán Tory
, Kellermayer Miklós
Orvosképzés
(2020)
-
Allélspecifikus inhibitorok nyomában: a RASopátia konzorcium célpontjában a KRAS fehérje onkogén mutációi
Kinga Nyíri
, Gergely Koppány
, Gyula Pálfy
, István Vida
, Szilárd Tóth
, Zoltán Orgován
, Ivan Ranđelović
, Marcell Baranyi
, Eszter Molnár
, György M. Keserű
, József Tóvári
, András Perczel
, Beáta G. Vértessy
, József Tímár
Magyar Onkológia
(2019)
63(4), 310-323
Kivonat
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Structural Diversity in Calmodulin - Peptide Interactions
Zsolt Dürvanger
, Veronika Harmat
Current Protein & Peptide Science
(2019)
1102 - 1111 doi.org/10.2174/1389203720666190925101937
Kivonat
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Achieving Functionality Through Modular Build-up: Structure and Size Selection of Serine Oligopeptidases
Anna J. Kiss-Szemán
, Veronika Harmat
, Dóra K. Menyhárd
Current Protein & Peptide Science
(2019)
1089 - 1101 DOI:10.2174/1389203720666190925103339
Kivonat
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Unwanted hydrolysis or α/β-peptide bond formation: how long should the rate-limiting coupling step take?
Viktória Goldschmidt Gőz
, Adrienn Nagy
, Viktor Farkas
, Ernő Keszei
, András Perczel
RSC Advances
(2019)
9(53): 30720–30728 | DOI: 10.1039/c9ra06124j
Kivonat
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Assignment of vibrational circular dichroism cross-referenced electronic circular dichroism spectra of flexible foldamer building blocks: towards assigning foldamers’ pure chiroptical properties
Viktor Farkas
, Adrienn Nagy
, Dóra K. Menyhárd
, András Perczel
Chemistry A European Journal
(2019)
25(65): 14890-14900 | doi.org/10.1002/chem.201903023
Kivonat
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A Convenient Synthetic Method to Improve Immunogenicity of Mycobacterium tuberculosis Related T-Cell Epitope Peptides
Kata Horváti
, Bernadett Pályi
, Judit Henczkó
, Gyula Balka
, Eleonóra Szabó
, Viktor Farkas
, Beáta Biri-Kovács
, Bálint Szeder
, Kinga Fodor
Vaccines
(2019)
7(3), 101, doi:10.3390/vaccines7030101
Kivonat
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Radiation-damage investigation of a DNA 16-mer
Valéria Bugris
, Veronika Harmat
, Györgyi Ferenc
, Sándor Brockhauser
, Ian Carmichael
, Elspeth F. Garman
Journal of Synchrotron Radiation
(2019)
998-1009 doi.org/10.1107/S160057751900763X
Kivonat
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Real-time pure shift measurements for uniformly isotope-labeled molecules using X-selective BIRD homonuclear decoupling
Jens D. Haller
, Andrea Bodor
, Burkhard Luy
Journal of Magnetic Resonance
(2019)
64-71 doi.org/10.1016/j.jmr.2019.03.011
Kivonat
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1,3-Dipolar Cycloaddition of Isatin-Derived Azomethine Ylides with 2H‐Azirines: Stereoselective Synthesis of 1,3- Diazaspiro[bicyclo[3.1.0]hexane]oxindoles
Anikó Angyal
, András Demjén
, Veronika Harmat
, János Wölfling
, László G. Puskás
, Iván Kanizsai
The Journal of Organic Chemistry
(2019)
4273-4281 DOI: 10.1021/acs.joc.9b00242
Kivonat
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Hydration shell differentiates folded and disordered states of a trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
Nóra Taricska
, Mónika Bokor
, Dóra K. Menyhárd
, Kálmán Tompa
, András Perczel
Scientific Reports
(2019)
9:2947 doi.org/10.1038/s41598-019-39121-5
Kivonat
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DUckCov: a Dynamic Undocking-Based Virtual Screening Protocol for Covalent Binders
Moira Rachman
, Andrea Scarpino
, Dávid Bajusz
, Gyula Pálfy
, István Vida
, András Perczel
, Xavier Barril
, György M. Keserű
ChemMedChem
(2019)
14, 1 – 12 DOI: 10.1002/cmdc.201900078
Kivonat
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Quantitative, Diffusion NMR Based Analytical Tool To Distinguish Folded, Disordered, and Denatured Biomolecules
Erika F. Dudás
, Andrea Bodor
American Chemical Society
(2019)
4929-4933 DOI: 10.1021/acs.analchem.8b05617
Kivonat
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Directed Evolution of Canonical Loops and Their Swapping between Unrelated Serine Proteinase Inhibitors Disprove the Interscaffolding Additivity Model
Eszter Boros
, Fanni Sebák
, Dávid Héja
, Dávid Szakács
, Katalin Zboray
, Gitta Schlosser
, András Micsonai
, József Kardos
, Andrea Bodor
, Gábor Pál
J. Mol. Biol.
(2019)
431, 557–575 | doi.org/10.1016/j.jmb.2018.12.003
Kivonat
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α/β‐Chimera peptide synthesis with cyclic β‐sugar amino acids: the efficient coupling protocol
Adrienn Nagy
, Viktória Goldschmidt Gőz
, István Pintér
, Viktor Farkas
, András Perczel
Amino Acids
(2019)
51(4), 669-678
Kivonat
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Protein Aggregation in a Nutshell: The Splendid Molecular Architecture of the Dreaded Amyloid Fibrils
Dániel Horváth
, Dóra K. Menyhárd
, András Perczel
Current Protein & Peptide Science
(2019)
20(11), 1077-1088 | doi: 10.2174/1389203720666190925102832.
Kivonat
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Quantum chemical calculations support pseudouridine synthase reaction through a glycal intermediate and provide details of the mechanism
Dóra J. Kiss
, Julianna Oláh
, Gergely Tóth
, Dóra K. Menyhárd
, György G Ferenczy
Springer Berlin Heidelberg
(2018)
137-162 | doi.org/10.1007/s00214-018-2361-6
Kivonat
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Crystal and solution structures of calcium complexes relevant to problematic waste disposal: calcium gluconate and calcium isosaccharinate
V. Bugris
, Cs. Dudás
, B. Kutus
, V. Harmat
, K. Csankó
, S. Brockhauser
, I. Pálinkó
, Peter Turner
, P. Sipos
Acta Crystallographica Section B
(2018)
598-609 | doi.org/10.1107/S2052520618013720
Kivonat
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The mutation-dependent pathogenicity of NPHS2 p.R229Q: A guide for clinical assessment
Ágnes Mikó
, Dóra K. Menyhárd
, Ambrus Kaposi
, Corinne Antignac
, Kálmán Tory
Wiley Online Library
(2018)
1854-1860 | DOI: 10.1002/humu.23660
Kivonat
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In Situ Terminal Functionalization of Polystyrene Obtained by Quasiliving ATRP and Subsequent Derivatizations
György Kasza
, Györgyi Szarka
, Andrea Bodor
, Gergely Kali
, Béla Iván
American Chemical Society
(2018)
1285, 281-295 | DOI: 10.1021/bk-2018-1285.ch015
Kivonat
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Multiple S100 protein isoforms and C-terminal phosphorylation contribute to the paralog-selective regulation of nonmuscle myosin 2 filaments
Péter Ecsédi
, Neil Billington
, Gyula Pálfy
, László Nyitray
, Bence Kiss
, Éva Bulyáki
, Andrea Bodor
, James R. Sellers
The Journal of Biological Chemistry
(2018)
293(38) 14850 –14867. | DOI10.1074/jbc.RA118.004277
Kivonat
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C-terminal oligomerization of podocin mediates interallelic interactions
Pál Stráner
, Eszter Balogh
, Gusztáv Schay
, Christelle Arrondel
, Ágnes Mikó
, Gerda L'Auné
, Alexandre Benmerah
, András Perczel
, Dóra K. Menyhárd
, Corinne Antignac
, Géraldine Mollet
, Kálmán Tory
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
(2018)
S0925-4439(18)30132-30137 | DOI: 10.1016/j.bbadis.2018.04.008 | PMID: 29660491
Kivonat
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Synthesis and in vitro biochemical evaluation of oxime bond- linked daunorubicin–GnRH-III conjugates developed for targeted drug delivery
Viktor Farkas
, Gábor Mező
, László Buday
, Beáta Biri-Kovács
, Bálint Szeder
, Sabine Schuster
, Zsuzsanna Szabó
, Gábor Halmos
Beilstein Journal of Organic Chemistry
(2018)
14, 756–771. doi:10.3762/bjoc.14.64
Kivonat
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Synthesis, spectral- and theoretical study, x-ray analysis, and antiproliferative activity of 4,5-dihydrobenzoferroceno[1,2-d][1,2,3]selenadiazole and its benzo-fused analogue
Tibor Pasinszki
, Dániel Dzsotján
, Győző György Lajgut
, Veronika Harmat
, Antal Csámpai
, Andrea Bor
, István Zupkó
Journal of Organometallic Chemistry
(2018)
863:70-76. | DOI: 10.1016/j.jorganchem.2018.03.031
Kivonat
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Synthesis and in vitro biochemical evaluation of oxime bond-linked daunorubicin–GnRH-III conjugates developed for targeted drug delivery
Sabine Schuster
, Beáta Biri-Kovács
, Bálint Szeder
, Viktor Farkas
, László Buday
, Zsuzsanna Szabó
, Gábor Halmos
, Gábor Mező
Beilstein J. Org. Chem.
(2018)
Beilstein J. Org. Chem. 14:756–771 | DOI:10.3762/bjoc.14.64
Kivonat
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New Antimicrobial Potential and Structural Properties of PAFB: A Cationic, Cysteine-Rich Protein from Penicillium chrysogenum Q176
Anna Huber
, Dorottya Hajdu
, Doris Bratschun-Khan
, Zoltán Gáspári
, Mihayl Varbanov
, Stéphanie Philippot
, Ádám Fizil
, András Czajlik
, Zoltán Kele
, Christoph Sonderegger
, László Galgóczy
, Andrea Bodor
, Florentine Marx
, Gyula Batta
Scientific Reports
(2018)
8:1751. PMID: 29379111 | DOI:10.1038/s41598-018-20002-2
Kivonat
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Approaches to Pyranuronic beta-Sugar Amino Acid Building Blocks of Peptidosaccharide Foldamers
Viktória Goldschmidt Gőz
, István Pintér
, Veronika Harmat
, András Perczel
Eur. J. Org. Chem.
(2018)
355-361. DOI: 10.1002/ejoc.201701612
Kivonat
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Dynamic control of RSK complexes by phosphoswitch-based regulation
Gergő Gógl
, Beáta Biri-Kovács
, Ádám L Póti
, Henrietta Vadászi
, Bálint Szeder
, Andrea Bodor
, Gitta Schlosser
, András Ács
, Lilla Turiák
, László Buday
, Anita Alexa
, László Nyitray
, Attila Reményi
FEBS J
(2018)
285:46-71. PMID: 29083550 | DOI: 10.1111/febs.14311
Kivonat
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First principles calculation of the reaction rates for ligand binding to myoglobin: the cases of NO and CO
Anikó Lábas
, Dóra K. Menyhárd
, Jeremy N. Harvey
, Julianna Oláh
Wiley Online Library
(2017)
5350-5358 | doi.org/10.1002/chem.201704867
Kivonat
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The impact of water on the ambivalent behavior and paradoxical phenomenon of the amyloid-β fibril protein
Tamás Vajda
, András Perczel
Biomol. Concepts
(2017)
8(5-6):213-220. PMIID: 29211680 | DOI: 10.1515/bmc-2017-0027
Kivonat
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Biochemical and pharmacological characterization of three opioid- nociceptin hybrid peptide ligands reveals substantially differing modes of their actions
Anna I. Erdei
, Adina Borbély
, Anna Magyar
, Nóra Taricska
, András Perczel
, Ottó Zsíros
, Győző Garab
, Edina Szűcs
, Ferenc Ötvös
, Ferenc Zádor
, Mihály Balogh
, Mahmoud Al-Khrasani
, Sándor Benyhe
Elsevier
(2017)
205-216 | doi.org/10.1016/j.peptides.2017.10.005
Kivonat
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The Piwi-piRNA pathway: road to immortality
Ádám Sturm
, András Perczel
, Zoltán Ivics
, Tibor Vellai
Aging Cell
(2017)
16:906-911. PMID: 28653810 | DOI: 10.1111/acel.12630
Kivonat
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Ezrin interacts with S100A4 via both its N- and C-terminal domains
Beáta Biri-Kovács
, Bence Kiss
, Henrietta Vadászi
, Gergő Gógl
, Gyula Pálfy
, György Török
, László Homolya
, Andrea Bodor
, László Nyitray
PLoS One
(2017)
12(5):e0177489 | doi: 10.1371/journal.pone.0177489 | PMID: 28493957
Kivonat
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Four Faces of the Interaction between Ions and Aromatic Rings
Dóra Papp
, Petra Rovó
, Imre Jákli
, Attila G. Császár
, András Perczel
Journal of Computational Chemistry
(2017)
38, 1762-1773 | doi.org/10.1002/jcc.24816
Kivonat
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Strong influence of intramolecular Si⋯O proximity on reactivity: Systematic molecular structure, solvolysis, and mechanistic study of cyclic N-trimethylsilyl carboxamide derivatives
Roland Szalay
, Veronika Harmat
, János Eőri
, Gábor Pongor
Tetrahedron Letters
(2017)
58(23):2186-2192. | DOI: 10.1016/j.tetlet.2017.04.057
Kivonat
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How weak an acid can be? Variations of H-bond and/or van der Waals Interaction of Weak Acids
Szebasztián Szaniszló
, Imre G. Csizmadia
, András Perczel
Struct. Chem.
(2017)
28(2):371-378. | DOI: 10.1007/s11224-016-0888-5
Kivonat
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Predictable conformational diversity in foldamers of sugar amino acids
Dóra K. Menyhárd
, Ilona Hudáky
, Imre Jákli
, György Juhász
, András Perczel
J. Chem. Inf. Model.
(2017)
57(4):757–768. DOI: 10.1021/acs.jcim.6b00488
Kivonat
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C‐3 epimers of sugar amino acids as foldameric building blocks: improved synthesis, useful derivatives, coupling strategies
Adrienn Nagy
, Barbara Csordás
, Virág Zsoldos-Mády
, István Pintér
, Viktor Farkas
, András Perczel
Amino Acids
(2017)
49(2):223–240. | doi: 10.1007/s00726-016-2346-5 | PMID: 27803987
Kivonat
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Challenging drug target for Parkinson's disease: Pathological complex of the chameleon TPPP/p25 and alpha-synuclein proteins
Tibor Szénási
, Judit Oláh
, Adél Szabó
, Sándor Szunyogh
, András Láng
, András Perczel
, Attila Lehotzky
, Vladimir N. Uversky
, Judit Ovádi
Biochim Biophys Acta - Molecular Basis of Disease
(2017)
1863(1):310-323. DOI: 10.1016/j.bbadis.2016.09.017. | PMID: 27671864
Kivonat
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The Eighth Central European Conference “Chemistry towards Biology”: Snapshot
András Perczel
, Ricardo D. Enriz
, Atanas G. Atanasov
, Vladimír Sklenář
, Jiří Nováček
, Veronika Papoušková
, Pavel Kadeřávek
, Lukáš Žídek
, Henryk Kozłowski
, Joanna Wątły
, Aleksandra Hecel
, Paulina Kołkowska
, Jaroslav Koča
, Radka Svobodová-Vařeková
, Lukáš Pravda
, David Sehnal
, Vladimír Horský
, Stanislav Geidl
, Pavel Matějka
, Adéla Jeništová
, Marcela Dendisová
, Alžběta Kokaislová
, Volkmar Weissig
, Mark Olsen
, Aidan Coffey
, Jude Ajuebor
, Ruth Keary
, Marta Sanz-Gaitero
, Mark J. van Raaij
, Olivia McAuliffe
, Birgit Waltenberger
, Andrei Mocan
, Karel Šmejkal
, Elke H. Heiss
, Marc Diederich
, Robert Musioł
, Janez Košmrlj
, Jarosław Polański
, Josef Jampílek
Molecules
(2016)
21(10):1381 DOI:10.3390/molecules21101381
Kivonat
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Origin of problems related to Staudinger reduction in carbopeptoid syntheses
Barbara Csordás
, Adrienn Nagy
, Veronika Harmat
, Virág Zsoldos-Mády
, Ibolya Leveles
, István Pintér
, Viktor Farkas
, András Perczel
Amino Acids
(2016)
48(11):2619-2633 DOI: 10.1007/s00726-016-2289-x | PMID: 27438266
Kivonat
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Multi-level changes in protein dynamics upon complex formation of the calcium-loaded S100A4 with a non-muscle myosin IIA tail fragment
Gyula Pálfy
, Bence Kiss
, László Nyitray
, Andrea Bodor
ChemBioChem
(2016)
17(19):1829-1838 DOI: 10.1002/cbic.201600280 | PMID: 27418229
Kivonat
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Aromatic cluster sensor of protein folding: near-UV ECD bands assigned to fold compactness
Viktor Farkas
, Imre Jákli
, Gábor K. Tóth
, András Perczel
Chemistry A Eur. J.
(2016)
22(39):13871–13883. DOI: 10.1002/chem.201602455 | PMID: 27504963
Kivonat
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Hydrogen-Bonding Network Anchors the Cyclic Form of Sugar Arylhydrazones
Viktória Goldschmidt Gőz
, István Pintér
, Antal Csámpai
, Imre Jákli
, Virág Zsoldos-Mády
, András Perczel
Eur. J. Org. Chem.
(2016)
20:3419-3426. DOI: 10.1002/ejoc.201600462
Kivonat
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The clear and dark sides of water: influence on the coiled coil folding domain
Tamás Vajda
, András Perczel
Biomol.Concepts
(2016)
7(3):189-195. DOI:10.1515/bmc-2016-0005 | PMID: 27180359
Kivonat
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Bacterial expression and/or solid phase peptide synthesis of 20-40 amino acid long polypeptides and miniproteins, the case study of Class B GPCR ligands
Pál Stráner
, Nóra Taricska
, Mária Szabó
, Gábor K. Tóth
, András Perczel
Curr. Prot. Pept. Sci.
(2016)
17(2):147-155. DOI: 10.2174/1389203716666151102105215 | PMID: 26521952
Kivonat
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Small Peptides Derived from Penetratin as Antibacterial Agents
Oscar Parravicini
, Csaba Somlai
, Sebastián A. Andujar
, Adriana D. Garro
, Beatriz Lima
, Alejandro Tapia
, Gabriela Feresin
, András Perczel
, Gábor Tóth
, Javier López Cascales
, Ana M. Rodríguez
, Ricardo D. Enriz
Arch.Pharm.Chem.Life.Sci.
(2016)
349:242-251. DOI: 10.1002/ardp.201500419
Kivonat
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Structural basis of Ribosomal S6 Kinase 1 (RSK1) inhibition by S100B Protein: modulation of the Extracellular Signal-regulated Kinase (ERK) signaling cascade in a calcium-dependent way
Gergő Gógl
, Anita Alexa
, Bence Kiss
, Gergely Katona
, Mihály Kovács
, Andrea Bodor
, Attila Reményi
, László Nyitray
J. Biol. Chem.
(2016)
291(1):11-27. DOI: 10.1074/jbc.M115.684928 | PMID: 26527685
Kivonat
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An engineered scorpion toxin analogue with improved Kv1.3 selectivity displays reduced conformational flexibility
Ádám Bartók
, Krisztina Fehér
, Andrea Bodor
, Kinga Rákosi
, Gábor K. Tóth
, Katalin E. Kövér
, György Panyi
, Zoltán Varga
Scientific Reports
(2015)
5:18397. DOI: 10.1038/srep18397 | PMID: 26689143
Kivonat
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Chiral recognition studies of α‑(nona fluoro-tert-butoxy)carboxylic acids by NMR spectroscopy
Anikó Nemes
, Tamás Csóka
, Szabolcs Béni
, Viktor Farkas
, József Rábai
, Dénes Szabó
J. Org. Chem.
(2015)
80(12):6267–6274 | DOI: 10.1021/acs.joc.5b00706 | PMID: 26024423
Kivonat
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Structural assembly of the signaling competent ERK2–RSK1 heterodimeric protein kinase complex
Anita Alexa
, Gergő Gógl
, Gábor Glatz
, Ágnes Garai
, András Zeke
, János Varga
, Erika Dudás
, Norbert Jeszenői
, Andrea Bodor
, Csaba Hetényi
, Attila Reményi
Proc. Natl. Acad. Sci. USA
(2015)
112(9):2711-2716. | DOI: 10.1073/pnas.1417571112 | PMID: 25730857
Kivonat
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Membrane interactions in small fast-tumbling bicelles as studied by 31P NMR
Andrea Bodor
, Katalin E. Kövér
, Lena Mäler
BBA Biomembranes
(2015)
1848(3):760-766. | DOI: 10.1016/j.bbamem.2014.12.001 | PMID: 25497765
Kivonat
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Catalytically distinct states captured in a crystal lattice: the substrate-bound and scavenger states of acylaminoacyl peptidase and their implications for functionality
Dóra K. Menyhárd
, Zoltán Orgován
, Zoltán Szeltner
, Ilona Szamosi
, Veronika Harmat
Acta Crystallogr D Biol Crystallogr.
(2015)
71(Pt 3):461-472. | DOI: 10.1107/S1399004714026819 | PMID: 25760596
Kivonat
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Development of Cyclic NGR Peptides with Thioether Linkage: Structure and Dynamics Determining Deamidation and Bioactivity
Kata N. Enyedi
, András Czajlik
, Krisztina Knapp
, András Láng
, Zsuzsa Majer
, Eszter Lajkó
, László Kőhidai
, András Perczel
, Gábor Mező
J. Med. Chem.
(2015)
58(4):1806-1817. | DOI: 10.1021/jm501630j | PMID: 25646854
Kivonat
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Phosphorylation as Conformational Switch from the Native to Amyloid State: Trp-Cage as a Protein Aggregation Model
József Kardos
, Bence Kiss
, András Micsonai
, Petra Rovó
, Dóra K. Menyhárd
, János Kovács
, Gábor K. Tóth
, András Perczel
J. Phys. Chem. B
(2015)
119(7):2946–2955. | DOI: 10.1021/jp5124234 | PMID: 25625571
Kivonat
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DYNLL2 Dynein Light Chain Binds to an Extended Linear Motif of Myosin 5a Tail That Has Structural Plasticity
Andrea Bodor
, László Radnai
, Csaba Hetényi
, Péter Rapali
, András Láng
, Katalin E. Kövér
, András Perczel
, Weixiao Y. Wahlgren
, Gergely Katona
, László Nyitray
Biochemistry
(2014)
53(45):7107-7122. | DOI: 10.1021/bi500574z | PMID: 25312846
Kivonat
-
Dynamics of small, folded proteins
Petra Rovó
, Dóra K. Menyhárd
, Gábor Náray-Szabó
, András Perczel
Protein Modelling
(2014)
223-248 |doi.org/10.1007/978-3-319-09976-7_10
Kivonat
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Role of water in protein folding, oligomerization, amyloidosis and miniprotein
Tamás Vajda
, András Perczel
J. Pept. Sci.
(2014)
20(10):747-759. | DOI: 10.1002/psc.2671. | PMID: 25098401
Kivonat
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Conservative Evolution, Sustainability, and Culture
Gábor Náray-Szabó
Comparative Literature and Culture
(2014)
16(1) |doi.org/10.7771/1481-4374.2316>
Kivonat
-
Protein structure and dynamics
Gábor Náray-Szabó
, András Perczel
Int. J. Terraspace Sci. Eng.
(2014)
6:7-16
Kivonat
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Strictly localised molecular orbitals in QM/MM methods
György G Ferenczy
, Gábor Náray-Szabó
Protein Modelling
(2014)
71-89 |doi.org/10.1007/978-3-319-09976-7_4
Kivonat
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Probing of primed and unprimed sites of calpains: Design, synthesis and evaluation of epoxysuccinyl-peptide derivatives as selective inhibitors
Levente E Dókus
, Dóra K. Menyhárd
, Ágnes Tantos
, Ferenc Hudecz
, Zoltán Bánóczi
European Journal of Medicinal Chemistry
(2014)
82:274-280. | DOI: 10.1016/j.ejmech.2014.05.058 | PMID: 24915003
Kivonat
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Rational Design of α-Helix-Stabilized Exendin-4 Analogues
Petra Rovó
, Viktor Farkas
, Pál Stráner
, Mária Szabó
, Ágnes Jermendy
, Orsolya Hegyi
, Gábor K. Tóth
, András Perczel
Biochemistry
(2014)
53(22):3540-3552. | DOI: 10.1021/bi500033c | PMID: 24828921
Kivonat
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The C-terminal random coil region tunes the Ca²⁺-binding affinity of S100A4 through conformational activation
Annette Duelli
, Bence Kiss
, Ida Lundholm
, Andrea Bodor
, Maxim V. Petoukhov
, Dmitri I. Svergun
, László Nyitray
, Gergely Katona
PLoS One
(2014)
9(5):e97654 | DOI: 10.1371/journal.pone.0097654 | PMID: 24830809
Kivonat
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On the Mechanism of Bifunctional Squaramide-Catalyzed Organocatalytic Michael Addition: A Protonated Catalyst as an Oxyanion Hole
Bianka Kótai
, György Kardos
, Andrea Hamza
, Viktor Farkas
, Imre Pápai
, Tibor Soós
Chem. Eur. J.
(2014)
20(19):5631-5639. | DOI: 10.1002/chem.201304553 | PMID: 24677388
Kivonat
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Önszerveződés és hajlékonyság: szubsztrát szelekciós stratégiák oligopeptidázokban
Harmat Veronika
MAGYAR KÉMIAI FOLYÓIRAT - KÉMIAI KÖZLEMÉNYEK
(2014)
120(4):155-158
-
Impairment of a model peptide by oxidative stress: Thermodynamic stabilities of asparagine diamide Cα-radical foldamers
Klára Z. Gerlei
, Lilla Élő
, Béla Fiser
, Michael C. Owen
, Imre Jákli
, Svend J. Knak Jensen
, Imre G. Csizmadia
, András Perczel
, Béla Viskolcz
Chem. Phys. Lett.
(2014)
593:104–108. | DOI: 10.1016/j.cplett.2013.12.037
Kivonat
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A theoretical study of the stability of disulfide bridges in various β-sheet structures of protein segment models
Natalie J. Galant
, Heeyeon Cheryl Song
, Imre Jákli
, Béla Viskolcz
, Imre G. Csizmadia
, Svend J. Knak Jensen
, András Perczel
Chem. Phys. Lett.
(2014)
593:48–54. | DOI: 10.1016/j.cplett.2013.12.065
Kivonat
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Mutation-dependent recessive inheritance of NPHS2-associated steroid-resistant nephrotic syndrome
Kálmán Tory
, Dóra K. Menyhárd
, Stéphanie Woerner
, Fabien Nevo
, Olivier Gribouval
, Andrea Kerti
, Pál Stráner
, Christelle Arrondel
, Evelyne Huynh Cong
, Tivadar Tulassay
, Géraldine Mollet
, András Perczel
, Corinne Antignac
Nat. Genet.
(2014)
46:299–304 | DOI: 10.1038/ng.2898 | PMID: 24509478
Kivonat
-
Structure and enzymatic mechanism of a moonlighting dUTPase
Ibolya Leveles
, Veronika Németh
, Judit E. Szabó
, Veronika Harmat
, Kinga Nyíri
, Ábris Ádám Bendes
, Veronika Papp-Kádár
, Imre Zagyva
, Gergely Róna
, Olivér Ozohanics
, Károly Vékey
, Judit Tóth
, Beáta G. Vértessy
Acta Crystallogr D Biol Crystallogr.
(2013)
D69:2298-2308. | DOI: 10.1107/S0907444913021136 | PMID: 24311572
Kivonat
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Atropisomerism of the Asn α Radicals Revealed by Ramachandran Surface Topology.
Klára Z. Gerlei
, Imre Jákli
, Milán Szőri
, Svend J. Knak Jensen
, Béla Viskolcz
, Imre G. Csizmadia
, András Perczel
J. Phys. Chem. B
(2013)
117(41):12402-12409. | DOI: 10.1021/jp4070906 | PMID: 24015919
Kivonat
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Multiple fuzzy interactions in the moonlighting function of thymosin-β4
Ágnes Tantos
, Beáta Szabó
, András Láng
, Zoltán Varga
, Maksym Tsylonok
, Mónika Bokor
, Tamás Verebélyi
, Pawel Kamasa
, Kálmán Tompa
, András Perczel
, László Buday
, Si Hyung Lee
, Yejin Choo
, Kyou-Hoon Han
, Péter Tompa
Intrinsically Disordered Proteins
(2013)
Kivonat
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Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling
Orsolya Barabás
, Vince Grolmusz
, Zoltán Szabadka
, Imre Zagyva
, Zoltán Kele
, Edina Rosta
, András Perczel
, Andrea Bodor
, Veronika Németh
, Matthias Wilmanns
Nucleic Acids Res.
(2013)
DOI: 10.1093/nar/gkt756 | PMID: 23982515
Kivonat
-
Penetratin and derivatives acting as antibacterial agents
Adriana D. Garro
, Ana M. Rodríguez
, Javier López Cascales
, Botond Penke
, Csaba Somlai
, András Perczel
, Gabriela Feresin
, Alejandro Tapia
, Beatriz Lima
, José A. Bombasaro
, Mónica S. Olivella
, Ricardo D. Enriz
Chem. Biol. Drug. Des.
(2013)
82(2):167-177. | DOI: 10.1111/cbdd.12143 | PMID: 23581817
Kivonat
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Quantum Mechanical Modeling: A Tool for the Understanding of Enzyme Reactions
Gábor Náray-Szabó
, Julianna Oláh
, Balázs Krámos
Biomolecules
(2013)
3:662-702. | DOI: 10.3390/biom3030662
Kivonat
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Foldamers of β-peptides: conformational preference of peptides formed by rigid building blocks. The first MI-IR spectra of a triamide nanosystem.
Gábor Pohl
, Esther Gorrea
, Vicenç Branchadell
, Rosa M. Ortuño
, András Perczel
, György Tarczay
Amino Acids
(2013)
45(4):957-973. | DOI: 10.1007/s00726-013-1552-7 | PMID: 23860847
Kivonat
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A self-compartmentalizing hexamer serine protease from Pyrococcus horikoshii: substrate selection achieved through multimerization
Dóra K. Menyhárd
, Anna Kiss-Szemán
, Éva Tichy-Rács
, Balázs Hornung
, Krisztina Rádi
, Zoltán Szeltner
, Klarissza Domokos
, Ilona Szamosi
, Gábor Náray-Szabó
, László Polgár
, Veronika Harmat
J Biol Chem
(2013)
288(24):17884-17894. | DOI: 10.1074/jbc.M113.451534 | PMID: 23632025
Kivonat
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Helix compactness and stability: Electron structure calculations of conformer
Imre Jákli
, Szilárd N. Fejér
, Ödön Farkas
, Béla Viskolcz
, Svend J. Knak Jensen
, Imre G. Csizmadia
, András Perczel
Chem. Phys. Lett.
(2013)
563:80-87.
Kivonat
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Foldamer Stability Coupled to Aggregation Propensity of Elongated Trp-Cage Miniproteins
Viktor Farkas
, Barbara Csordás
, Orsolya Hegyi
, Gábor K. Tóth
, András Perczel
Eur. J. Org. Chem.
(2013)
13:3513-3522. | DOI: 10.1002/ejoc.201300071
Kivonat
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Quantitative characterization of the activation steps of Mannan-Binding Lectin (MBL)-Associated Serine Proteases (MASPs) points to the central role of MASP-1 in the initiation of the complement lectin pathway
Márton Megyeri
, Veronika Harmat
, Balázs Major
, Ádám Végh
, Júlia Balczer
, Dávid Héja
, Katalin Szilágyi
, Dániel Datz
, Gábor Pál
, Péter Závodszky
, Péter Gál
, József Dobó
J Biol Chem
(2013)
288(13):8922-8934. | DOI: 10.1074/jbc.M112.446500 | PMID: 23386610
Kivonat
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Structural insights into the Trp-cage folding intermediate formation
Petra Rovó
, Pál Stráner
, András Láng
, István Bartha
, Kristóf Huszár
, László Nyitray
, András Perczel
Chem. Eur. J.
(2013)
19(8):2628-2640. | DOI: 10.1002/chem.201203764 | PMID: 23319425
Kivonat
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Star and Hyperbranched Polyisobutylenes via Terminally Reactive Polyisobutylene‐Polystyrene Block Copolymers
Gergely Kali
, Márta Szesztay
, Andrea Bodor
, Béla Iván
Macromolecular Symposia
(2013)
323(1), 37-41 | DOI: 10.1002/masy.201100116
Kivonat
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Monospecific inhibitors show that both mannan-binding lectin-associated serine protease-1 (MASP-1) and -2 Are essential for lectin pathway activation and reveal structural plasticity of MASP-2
Dávid Héja
, Veronika Harmat
, Krisztián Fodor
, Matthias Wilmanns
, József Dobó
, Péter Závodszky
, Péter Gál
, Gábor Pál
J. Biol. Chem.
(2012)
287(24):20290-300. doi: 10.1074/jbc.M112.354332 | PMID: 22511776
Kivonat
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Synthesis and preliminary structural and binding characterization of new enantiopure crown ethers containing an alkyl diarylphosphinate or a proton-ionizable diarylphosphinic acid unit
György Székely
, Barbara Csordás
, Viktor Farkas
, József Kupai
, Péter Pogány
, Zsuzsanna Sánta
, Zoltán Szakács
, Tünde Tóth
, Miklós Hollósi
, Péter Huszthy
Eur. J. Org. Chem.
(2012)
18:3396-3407. DOI: 10.1002/ejoc.201101769
Kivonat
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The role of entropy in initializing the aggregation of peptides: A first principle study on oligopeptide oligomerization
Pohl G
, Jákli I
, Csizmadia IG
, Papp D
, Matías GF
, Perczel A
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2012)
14:(4) pp. 1507-1516.
Kivonat
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Exploiting diverse stereochemistry of b-amino acids: Toward a rational design of sheet-forming b-peptide systems
Pohl G
, Beke-Somfai T
, Csizmadia IG
, Perczel A
AMINO ACIDS
(2012)
43:(2) pp. 735-749.
Kivonat
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Chemistry for life sciences
Perczel A
, Kiss T
ACTUALITE CHIMIQUE &:(
(2012)
360) p. A3.
Kivonat
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Chemicalstability and structure –activity relationship studies of novelcyclic NGR peptides.
MEZŐ G
, ENYEDI K
, CZAJLIK A
, SZABÓ I
, HEGEDÜS R
, MAJER ZS
, LAJKÓ E
, KŐHIDA L
, Perczel A
University of Athens, Laboratory of Organic Chemistry,
(2012)
2012. pp. 588-589.<br>(ISBN:978-960-466-121-3)
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Chemical stability and structure - activity relationship studies of novel cyclic NGR peptides
MEZŐ G
, Horvath R
, Orgovan N
, Kohidai L
, LAJKÓ E
, CZAJLIK A
, Majer Z
, Mihala N
, Hegedues R
, SZABÓ I
, ENYEDI K
, Perczel A
JOURNAL OF PEPTIDE SCIENCE
(2012)
18:(1) pp. S178-S179.
Kivonat
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Variation of conformational properties at a glance. True graphical visualization of the Ramachandran surface topology as a periodic potential energy surface
Jákli I
, Knak Jensen SJ
, Csizmadia IG
, Perczel A
CHEMICAL PHYSICS LETTERS
(2012)
547: pp. 82-88.
Kivonat
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Secondary structure of short β-peptides as the chiral expression of monomeric building units: A rational and predictive model
Gorrea E
, Pohl G
, Nolis P
, Celis S
, Burusco KK
, Branchadell V
, Perczel A
, Ortuño RM
JOURNAL OF ORGANIC CHEMISTRY
(2012)
77:(21) pp. 9795-9806.
Kivonat
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Charged single alpha-helices in proteomes revealed by a consensus prediction approach
Gáspári Z
, Süveges D
, Perczel A
, Nyitray L
, Tóth G
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
(2012)
1824: pp. 637-646.
Kivonat
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Kémlelni a láthatatlant: építőelemek, foldamerek, peptidek, és fehérjék
Bodor Andrea
, Farkas Viktor
, Harmat Veronika
, Jákli Imre
, Karancsiné Menyhárd Dóra
, Stráner Pál
, Perczel András
MAGYAR KÉMIAI FOLYÓIRAT - KÉMIAI KÖZLEMÉNYEK
(2012)
118: pp. 159-167.
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Estimating intrinsic structural preferences of de novo emerging random-sequence proteins: Is aggregation the main bottleneck?
Annamária F Ángyán
, András Perczel
, Zoltán Gáspári
FEBS LETTERS
(2012)
586: pp. 2468-2472.
Kivonat
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Crystallization and preliminary crystallographic analysis of dUTPase from the φ11 helper phage of Staphylococcus aureus
Ibolya Leveles
, Gergely Róna
, Imre Zagyva
, Ábris Ádám Bendes
, Veronika Harmat
, Beáta G. Vértessy
Acta Crystallogr Sect F Struct Biol Cryst Commun.
(2011)
67(Pt 11):1411-1413. | DOI: 10.1107/S1744309111034580 | PMID: 22102244
Kivonat
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Freezing effect on chirality amplification of L-asparagine by crystallization of the racemate in preferential condition
Tamás Vajda
, Miklós Hollósi
CRYOLETTERS
(2011)
32: 447-450 | PMID: 22227704
Kivonat
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Suzuki-Miyaura cross-coupling reactions of halo derivatives of 4H-pyrido[1,2-a]pyrimidin-4-ones
Annamária Molnár
, Anita Kapros
, László Párkányi
, Zoltán Mucsi
, Gábor Vlád
, István Hermecz
Org Biomol Chem
(2011)
9(19):6559-6565. DOI: 10.1039/c1ob05505d PMID: 21808806
Kivonat
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Transformation of aldose formazans. Novel synthesis of 2-acetamido-2-deoxypentonolactones and a new pent-2-enose formazan.
Zsoldos-Mády V
, Pintér I
, Peredy-Kajtár M
, Perczel A
Carbohydr Res
(2011)
346(12):1534-1540. DOI: 10.1016/j.carres.2011.04.026 PMID: 21592466 Corrigendum: Carbohydr Res (2011) 346(17): 2823.
Kivonat
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Cooperativity network of Trp-cage miniproteins: probing salt-bridges
Petra Rovó
, Viktor Farkas
, Orsolya Hegyi
, Orsolya Szolomájer-Csikós
, Gábor K. Tóth
, András Perczel
J Pept Sci
(2011)
17(9):610-619. DOI: 10.1002/psc.1377 PMID: 21644245
Kivonat
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Directed evolution reveals the binding motif preference of the LC8/DYNLL hub protein and predicts large numbers of novel binders in the human proteome
Péter Rapali
, László Radnai
, Dániel Süveges
, Veronika Harmat
, Ferenc Tölgyesi
, Weixiao Y. Wahlgren
, Gábor Pál
PLoS One
(2011)
6(4):e18818. | DOI: 10.1371/journal.pone.0018818 | PMID: 21533121
Kivonat
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Structure and catalysis of acylamonoacyl peptidase: closed and open subunits of a dimer oligopeptidase
Veronika Harmat
, Klarissza Domokos
, Dóra K. Menyhárd
, Anna Palló
, Zoltán Szeltner
, Ilona Szamosi
, Tamás Beke
, Gábor Náray-Szabó
, László Polgár
Journal of Biological Chemistry
(2011)
286:1987-1998. PMID: 21084296 | DOI: 10.1074/jbc.M110.169862
Kivonat
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Erratum: Transformation of aldose formazans. Novel synthesis of 2-acetamido-2-deoxypentonolactones and a new pent-2-enose formazan (Carbohydrate Research (2011) 346 (1534-1540))
Zsoldos-Mády V
, Pintér I
, Peredy-Kajtár M
, Perczel A
CARBOHYDRATE RESEARCH
(2011)
346:(17) p. 2823.
Kivonat
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Zn(2+)-induced rearrangement of the disordered TPPP/p25 affects its microtubule assembly and GTPase activity.
Zotter A
, Oláh J
, Hlavanda E
, Bodor A
, Perczel A
, Szigeti K
, Fidy J
, Ovádi J
BIOCHEMISTRY
(2011)
50:(44) pp. 9568-9578.
Kivonat
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Disordered TPPP/P25 Binds GTP and Displays Mg(2+)-Dependent Gtpase Activity.
Zotter A
, Bodor A
, Oláh J
, Hlavanda E
, Orosz F
, Perczel A
, Ovádi J
FEBS LETTERS
(2011)
585:(5) pp. 803-808.
Kivonat
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Hyperfine-Shifted (13)C Resonance Assignments in an Iron-Sulfur Protein with Quantum Chemical Verification: Aliphatic C-H center dot center dot center dot S 3-Center-4-Electron Interactions
Westler WM
, Lin IJ
, Perczel A
, Weinhold F
, Markley JL
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2011)
133:(5) pp. 1310-1316.
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Full backbone assignment and dynamics of the intrinsically disordered dehydrin ERD14.
Szalainé Ágoston B
, Kovács D
, Tompa P
, Perczel A
BIOMOLECULAR NMR ASSIGNMENTS
(2011)
5:(2) pp. 189-193.
Kivonat
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New Small-Size Antifungal Peptides: Design, Synthesis and Antifungal Activity
Garro AD
, Garibotto FM
, Rodriguez AM
, Raimondi M
, Zacchino SA
, Perczel A
, Somlai C
, Penke B
, Enriz RD
LETTERS IN DRUG DESIGN AND DISCOVERY
(2011)
8:(6) pp. 562-567.
Kivonat
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Penetratin analogues acting as antifungal agents
Francisco M Garibotto
, Adriana D. Garro
, Ana M. Rodríguez
, Marcela Raimondi
, Susana A. Zacchino
, András Perczel
, Csaba Somlai
, Botond Penke
, Ricardo D. Enriz
Eur. J. Med. Chem.
(2011)
46(1):370-377. | DOI: 10.1016/j.ejmech.2010.10.025. | PMID: 21093119
Kivonat
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Local Protein Backbone Folds Determined by Calculated NMR Chemical Shifts
András Czajlik
, Ilona Hudáky
, András Perczel
JOURNAL OF COMPUTATIONAL CHEMISTRY
(2011)
32:(16) pp. 3362-3382.
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Interaction between separated consecutive complement control modules of human C1r: implications for dimerization of the full-length protease.
András Láng
, Balázs Major
, Katalin Szilágyi
, Zoltán Gáspári
, Péter Gál
, Péter Závodszky
, András Perczel
FEBS Lett.
(2010)
584(22):4565-4569. | DOI: 10.1016/j.febslet.2010.10.033 | PMID: 20970424
Kivonat
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Protein dynamics as reported by NMR
Zoltán Gáspári
, András Perczel
Annu. Rep. NMR
(2010)
Vol. 71, in press
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Detecting atypical examples of known domain types by sequence similarity searching: The SBASE domain library approach
Somdutta Dhir
, Mircea Pacurar
, Dino Franklin
, Zoltán Gáspári
, Attila Kertész-Farkas
, Frank Eisenhaber
, Sándor Pongor
Curr. Protein Pept. Sci.
(2010)
11(7):538-549. | DOI: 10.2174/138920310794109148 | PMID: 20887262
Kivonat
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Aromatic stacking between nucleobase and enzyme promotes phosphate ester hydrolysis in dUTPase
Ildikó Pécsi
, Ibolya Leveles
, Veronika Harmat
, Beáta G. Vértessy
, Judit Tóth
Nucleic Acids Res.
(2010)
38(20):7179-7186. | DOI: 10.1093/nar/gkq584 | PMID: 20601405
Kivonat
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CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data
András Perczel
, Annamária F. Ángyán
, Balázs Szappanos
, Zoltán Gáspári
BMC Structural Biology
(2010)
10:39. | DOI: 10.1186/1472-6807-10-39. | PMID: 21034466
Kivonat
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Intermodule cooperativity in the structure and dynamics of consecutive complement control modules in human C1r
András Láng
, Katalin Szilágyi
, Balázs Major
, Péter Gál
, Péter Závodszky
, András Perczel
FEBS J.
(2010)
277(19):3986-3998. | DOI: 10.1111/j.1742-4658.2010.07790.x | PMID: 20796027
Kivonat
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Structure and mechanism of calmodulin binding to a signaling sphingolipid reveal new aspects of lipid-protein interactions
Erika Kovács
, Veronika Harmat
, Judit Tóth
, Beáta G. Vértessy
, Károly Módos
, József Kardos
, Károly Liliom
FASEB J.
(2010)
24(10):3829-39. | DOI: 10.1096/fj.10-155614 | PMID: 20522785
Kivonat
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New antifungal peptides. Synthesis, bioassays and initial structure prediction by CD spectroscopy
Mónica S. Olivella
, Ana M. Rodríguez
, Susana A. Zacchino
, Csaba Somlai
, Botond Penke
, Viktor Farkas
, András Perczel
, Ricardo D. Enriz
Bioorg. Med. Chem. Lett.
(2010)
20(16):4808-4011. | DOI: 10.1016/j.bmcl.2010.06.105. | PMID: 20620056
Kivonat
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Extended apolar β-peptide foldamers: the role of axis chirality on β-peptide sheet stability
Gábor Pohl
, Tamás Beke
, Imre G. Csizmadia
, András Perczel
J. Phys. Chem. B
(2010)
114(29):9338-9348. | DOI: 10.1021/jp100955u. | PMID: 20666395
Kivonat
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Direct contacts between conserved motifs of different subunits provide major contribution to active site organization in human and mycobacterial dUTPases
Enikő Takács
, Ibolya Leveles
, Veronika Harmat
, Anna Lopata
, Judit Tóth
, Beáta G. Vértessy
FEBS Lett.
(2010)
584(14):3047-54. | DOI: 10.1016/j.febslet.2010.05.018 | PMID: 20493855
Kivonat
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Folded-unfolded cross-predictions and protein evolution: the case study of coiled-coils
Balázs Szappanos
, Dániel Süveges
, László Nyitray
, András Perczel
, Zoltán Gáspári
FEBS Lett.
(2010)
584(8):1623-1627. | DOI: 10.1016/j.febslet.2010.03.026. | PMID: 20303956
Kivonat
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Stability of the hydration layer of tropocollagen: A QM study
Villő K. Pálfi
, András Perczel
J. Comput. Chem.
(2010)
31(4):764-777. | DOI: 10.1002/jcc.21361. | PMID: 19569200
Kivonat
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Reconciling the lock-and-key and dynamic views of canonical serine protease inhibitor action
Zoltán Gáspári
, Péter Várnai
, Balázs Szappanos
, András Perczel
FEBS Lett.
(2010)
584(1):203-206. | DOI: 10.1016/j.febslet. | PMID: 19932101
Kivonat
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Probing dynamic protein ensembles with atomic proximity measures
Zoltán Gáspári
, Annamária F. Ángyán
, Somdutta Dhir
, Dino Franklin
, András Perczel
, Alessandro Pintar
, Sándor Pongor
Curr. Protein Pept. Sci.
(2010)
11(7):515-522. | DOI: 10.2174/138920310794109201 | PMID: 20887264
Kivonat
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Biophysical studies of the membrane location of the voltage-gated sensors in the HsapBK and KvAP K+ channels.
Henrik Biverståhl
, Jesper Lind
, Andrea Bodor
, Lena Mäler
Biochem. Biophys. Acta
(2009)
1788:1976-1986
Kivonat
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Characterization of a novel acylaminoacyl peptidase with hexameric structure and endopeptidase activity
Zoltán Szeltner
, András L. Kiss
, Klarissza Domokos
, Veronika Harmat
, Gábor Náray-Szabó
, László Polgár
Biochem. Biophys. Acta
(2009)
1794:1204-1210
Kivonat
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MASP-1, a Promiscuous Complement Protease: Structure of Its Catalytic Region Reveals the Basis of Its Broad Specificity
József Dobó
, Veronika Harmat
, László Beinrohr
, Edina Sebestyén
, Péter Závodszky
, Péter Gál
J. Immunol.
(2009)
183:1207-1214.
Kivonat
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Theoretical aspects of molecular recognition.
Veronika Harmat
, Gábor Náray-Szabó
Croat. Chem. Acta
(2009)
82:277-282.
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Chiral and achiral fundamental conformational building units of β-peptides: a matrix isolation conformational study on Ac-β-HGly-NHMe and Ac-β-HAla-NHMe
Tamás Beke
, Csaba Somlai
, Gábor Magyarfalvi
, András Perczel
, György Tarczay
J. Phys. Chem. B
(2009)
113:7918-7926
Kivonat
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The inherent flexibility of peptides and protein fragments quantitized by CD in conjunction with CCA+
Imre Jákli
, András Perczel
J. Pept. Sci.
(2009)
15:738-752.
Kivonat
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Combined NMR three-bond scalar coupling measurements and QM calculations to calculate OH-rotamer equilibrium of polyalcohols
Katalin E. Kövér
, Tamás Beke
, András Lipták
, András Perczel
J. Comput. Chem.
(2009)
30:540-550.
Kivonat
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Functional Aspects of the Solution Structure and Dynamics of PAF, a Highly Stable Antifungal Protein from Penicillium chrysogenum
Gyula Batta
, Herbert Lindner
, István Pócsi
, Nikoletta Hegedüs
, Éva Leiter
, Andrea Eigentler
, Anil Kumar Chhillar
, Lydia Kaiserer
, Bettina Sarg
, Ulrike Binder
, Katalin E. Kövér
, Szabolcs Sándor
, Zoltán Gáspári
, Teréz Barna
, Florentine Marx
FEBS J.
(2009)
276:2875-2890.
Kivonat
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Charged single α-helix: a versatile protein structural motif
Dániel Süveges
, Zoltán Gáspári
, Gábor Tóth
, László Nyitray
Proteins
(2009)
74:905-916.
Kivonat
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Calmodulin in Complex with Proteins and Small Molecule Ligands: Operating with the Element of Surprise; Implications for Structure-Based Drug Design
Dóra K. Menyhárd
, György M. Keserű
, Gábor Náray-Szabó
Current Computer-Aided Drug Design
(2009)
5(4), 264 - 279 | doi: 10.2174/157340909789577874
Kivonat
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Prolyl oligopeptidase inhibition by N-acyl-pro-pyrrolidine-type molecules
Károly Kánai
, Péter Arányi
, Zsolt Böcskei
, György Ferenczy
, Veronika Harmat
, Kálmán Simon
, Sándor Bátori
, Gábor Náray-Szabó
, István Hermecz
J Med Chem.
(2008)
51(23):7514-7522. | DOI: 10.1021/jm800944x | PMID: 19006380
Kivonat
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Purification, crystallization and preliminary X-ray analysis of human mannose-binding lectin-associated serine protease-1 (MASP-1) catalytic region
József Dobó
, Veronika Harmat
, Edina Sebestyén
, László Beinrohr
, Péter Závodszky
, Péter Gál
Acta Crystallogr Sect F Struct Biol Cryst Commun.
(2008)
64(Pt 9):781-784. | DOI: 10.1107/S174430910802294X | PMID: 18765903
Kivonat
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Structural and kinetic contributions of the oxyanion binding site to the catalytic activity of acylaminoacyl peptidase
András L. Kiss
, Anna Palló
, Gábor Náray-Szabó
, Veronika Harmat
, László Polgár
J Struct Biol.
(2008)
162(2):312-323. | DOI: 10.1016/j.jsb.2008.01.012 | PMID:
Kivonat
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Cooperation between a salt bridge and the hydrophobic core triggers fold stabilization in a Trp-cage miniprotein
Péter Hudáky
, Pál Stráner
, Viktor Farkas
, Györgyi Váradi
, Gábor Tóth
, András Perczel
Biochemistry
(2008)
47(3):1007-1016. DOI: 10.1021/bi701371x PMID: 18161949
Kivonat
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Local structural preferences of calpastatin, the intrinsically unstructured protein inhibitor of calpain
Róbert Kiss
, Dénes Kovács
, Péter Tompa
, András Perczel
Biochemistry
(2008)
47:6936-6945.
Kivonat
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A redesigned genetic code for selective labeling in protein NMR
Zoltán Gáspári
, Gábor Pál
, András Perczel
BioEssays
(2008)
30:772-780.
Kivonat
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Structure and stability of short β-peptide nanotubes: a non-natural representative of collagen?
András Czajlik
, Tamás Beke
, Andrea Bottoni
, András Perczel
J. Phys. Chem. B
(2008)
112:7956-7966.
Kivonat
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Intrinsic structural disorder of DF31, a Drosophila protein of chromatin decondensation and remodeling activities
Edit Szőllősi
, Mónika Bokor
, Andrea Bodor
, András Perczel
, Éva Klement
, Katalin F. Medzihraszky
, Kálmán Tompa
, Péter Tompa
J. Proteome Res.
(2008)
7:2291-2299.
Kivonat
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Calcium-induced tripartite binding of intrinsically disordered calpastatin to its cognate enzyme, calpain
Róbert Kiss
, Zoltán Bozóky
, Dénes Kovács
, Gergely Róna
, Péter Friedrich
, Péter Dvortsák
, Rudinger Weisemann
, Péter Tompa
, András Perczel
FEBS Lett.
(2008)
582:2149-2154.
Kivonat
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Antibody recognition and conformational flexibility of a plaque-Specific β-amyloid epitope modulated by non-native peptide flanking regions
Marilena Manea
, Michael Przybylski
, András Perczel
, Ödön Farkas
, Anikó Horváth
, Andrea Bodor
, Kata Horváti
, Gábor Mező
, Adrián Kalászi
, Ferenc Hudecz
J. Med. Chem.
(2008)
51:1150-1161
Kivonat
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The mechanism of the reverse recovery step, phosphate release, and actin activation of Dictyostelium myosin II
Máté Gyimesi
, Bálint Kintses
, Andrea Bodor
, András Perczel
, Stefan Fischer
, Clive R. Bagshaw
, András Málnási-Csizmadia
J. Biol. Chem.
(2008)
283:8153-8163.
Kivonat
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A theoretical comparison of self-assembling α- and β-peptide nanostructures: toward design of β-barrel frameworks.
Tamás Beke
, András Czajlik
, Balázs Bálint
, András Perczel
ACS Nano
(2008)
2:545-553.
Kivonat
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How stable is a collagen triple helix? An ab initio study on various collagen and beta-sheet forming sequences
Villő Pálfi
, András Perczel
J. Comput. Chem.
(2008)
29:1374-1386
Kivonat
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A matrix isolation study on Ac-L-Pro-NH2, a frequent structural element of β- and γ-turns of peptides and proteins
Gábor Pohl
, András Perczel
, Elemér Vass
, Gábor Magyarfalvi
, György Tarczay
Tetrahedron
(2008)
64(9):2126-2133.
Kivonat
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Distribution and evolution of short tandem repeats in closely related bacterial genomes
Edit Kassai-Jáger
, Csaba Ortutay
, Gábor Tóth
, Tibor Vellai
, Zoltán Gáspári
Gene
(2008)
, 410(1):18-25.
Kivonat
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Fast protein fold estimation from NMR-derived distance restraints
Annamária F. Ángyán
, András Perczel
, Sándor Pongor
, Zoltán Gáspári
Bioinformatics
(2008)
24(2):272-275.
Kivonat
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The prolylproline unit in model peptides and in fragments from databases
Ilona Hudáky
, András Perczel
Proteins
(2008)
70(4):1389-1407.
Kivonat
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Revisiting the mechanism of the autoactivation of the complement protease C1r in the C1 complex: Structure of the active catalytic region of C1r
József Kardos
, Péter Závodszky
, Yuji Goto
, Gábor Náray-Szabó
, László Gráf
, Katalin Szilágyi
, Orsolya Barabás
, Anna Palló
, Veronika Harmat
, Péter Gál
Mol. Immunol.
(2008)
45(6):1752-1760
Kivonat
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Dead-end street of protein folding: thermodynamic rationale of amyloid fibril formation
András Perczel
, Péter Hudáky
, Villő Pálfi
J. Am. Chem. Soc.
(2007)
, 129(48):14959-14965
Kivonat
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pKa optimized catalysis in serine proteinases, an ab initio study on the catalaytic His
Péter Hudáky
, András Perczel
Int. J. Quantum Chem.
(2007)
107(11):2178-2183
Kivonat
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A matrix isolation study on Ac-Gly-NHMe and Ac-L-Alai-NHMe, the simplest chiral and achiral building blocks of peptides and proteins
Gábor Pohl
, András Perczel
, Elemér Vass
, Gábor Magyarfalvi
, György Tarczay
Phys. Chem. Chem. Phys.
(2007)
9:4698-4708.
Kivonat
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Information accumulation in helical oligopeptide structures
Béla Viskolcz
, Szilárd N. Fejér
, Svend J. Knak Jensen
, András Perczel
, Imre G. Csizmadia
Chem. Phys. Lett.
(2007)
450: 123-126.
Kivonat
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Quantum mechanical studies on the existence of a trigonal bipyramidal phosphorane intermediate in enzymatic phosphate ester hydrolysis
Imre Berente
, Tamás Beke
, Gábor Náray-Szabó
Theor. Chem. Acc.
(2007)
118:129-134
Kivonat
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Major human γ-aminobutyrate transporter: In silico prediction of substrate efficacy
Anna Palló
, Ákos Bencsura
, László Héja
, Tamás Beke
, András Perczel
, Julianna Kardos
, Ágnes Simon
Biochem. Biophy. Res. Commun.
(2007)
Kivonat
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A new synthetic method for the preparation of star-shaped polyisobutylene with hyperbranched polystyrene core
Gergely Kali
, Márta Szesztay
, Andrea Bodor
, Béla Iván
Macromol. Chem. Phys.
(2007)
208: 1388-1393.
Kivonat
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Homogeneous gold-catalyzed hydrosilylation of aldehydes
Diána Lantos
, Marıa Contelb
, Sergio Sanzb
, Andrea Bodor
, István T. Horváth
J. Organomet. Chem.
(2007)
692: 1799-1805
Kivonat
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Imidazolium ionic liquids as solvents for cerium(IV)-mediated oxidation reactions
Hasan Mehdi
, Andrea Bodor
, Diána Lantos
, István T. Horváth
, Dirk E. De Vos
, Koen Binnemans
J. Org. Chem.
(2007)
72: 517-524.
Kivonat
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Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins
Veronika Németh-Pongrácz
, Emese Kónya
, Katalin F. Medzihradszky
, Éva Hunyadi-Gulyás
, Éva Klement
, Veronika Harmat
, Maxim Petoukhov
, Dmitri Svergun
, Helena Zábranská
, Michalea Rumlová
, Iva Pichová
, István Simon
, Mónika Fuxreiter
, Orsolya Barabás
, Beáta G. Vértessy
Nucleic Acids Res.
(2007)
, 35: 495-505.
Kivonat
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The acylaminoacyl peptidase from Aeropyrum pernix K1 thought to be an exopeptidase displays endopeptidase activity
András L. Kiss
, Balázs Hornung
, Krisztina Rádi
, Zsolt Gengeliczki
, Bálint Sztáray
, Tünde Juhász
, Zoltán Szeltner
, Veronika Harmat
, László Polgár
J. Mol. Biol.
(2007)
368: 509-520.
Kivonat
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C1 inhibitor serpin domain structure reveals the likely mechanism of heparin potentiation and conformational disease
László Beinrohr
, Veronika Harmat
, József Dobó
, Zsolt Lörincz
, Péter Gál
, Péter Závodszky
J. Biol. Chem.
(2007)
282: 21100-21109.
Kivonat
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Divergent microsatellite evolution in the human and chimpanzee lineages
Zoltán Gáspári
, Csaba Ortutay
, Gábor Tóth
FEBS Lett.
(2007)
581(13):2523-2526.
Kivonat
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When the surface tells what lies beneath: Combinatorial phage-display mutagenesis reveals complex network of surface-core interactions in the pacifastin protease inhibitor family
Borbála Szenthe
, András Patthy
, Zoltán Gáspári
, Adrienna Katalin Kékesi
, László Gráf
, Gábor Pál
J. Mol. Biol.
(2007)
370(1):63-79.
Kivonat
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Structure, enzymatic stability and antitumor activity of sea lamprey GnRH-III and its dimer derivatives
Gábor Mező
, András Perczel
, Michael Przybylski
, Magdolna Kovács
, Orsolya Csuka
, Borbála Vincze
, Marian Boldizsár
, Bence Kapuvári
, Andrea Bodor
, Elemér Vass
, Zsuzsa Majer
, Viktor Farkas
, Annamária Jakab
, Marilena Manea
, András Czajlik
, Ferenc Hudecz
Peptides
(2007)
28(4): 806-820
Kivonat
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Determining the molecular basis for the pH-dependent interaction between the Link module of human TSG-6 and hyaluronan
Charles D. Blundell
, David J. Mahoney
, Martin R. Cordell
, Andrew Almond
, Jan D. Kahmann
, András Perczel
, Jonathan D. Taylor
, Iain D. Campbell
, Anthony J. Day
J. Biol. Chem.
(2007)
, 282:12976-12988.
Kivonat
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Modeling-based characterization of the elicitor function of amino acid 461 of Cucumber mosaic virus 1a protein in the hypersensitive response
Katalin Salánki
, Ákos Gellért
, Gábor Náray-Szabó
, Ervin Balázs
Virology
(2007)
358: 109-118.
Kivonat
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A combined electronegativity equalization and electrostatic potential fit method for the determination of atomic point charges
Imre Berente
, Eszter Czinki
, Gábor Náray-Szabó
J. Comput. Chem.
(2007)
28: 1936-1942.
Kivonat
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A Protein Classification Benchmark collection for machine learning
Paolo Sonego
, Mircea Pacurar
, Somdutta Dhir
, Attila Kertész-Farkas
, András Kocsor
, Zoltán Gáspári
, Jack Leunissen
, Sándor Pongor
Nucleic Acids Res.
(2007)
, 35(Database issue):D232-D236.
Kivonat
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Freezing effect on chirality generation of DL-alanine-N-carboxy-anhydride oligomerization in aqueous solution
Tamás Vajda
, Miklós Hollósi
Protein Pept. Lett.
(2007)
14(9):854-858. | DOI: http://dx.doi.org/10.2174/092986607782110275 | PMID: 18045225
Kivonat
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Enzyme:substrate hydrogen bond shortening during the acylation phase of serine protease catalysis
Krisztián Fodor
, Veronika Harmat
, Richard Neutze
, László Szilágyi
, László Gráf
, Gergely Katona
Biochemistry
(2006)
45(7):2114-2121. | 10.1021/bi0517133 | PMID: 16475800
Kivonat
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Prediction of folding preference of 10kDa silk-like proteins using a lego-approach and ab initio calculations
Gábor Pohl
, Tamás Beke
, János Borbély
, András Perczel
J. Am. Chem. Soc.
(2006)
, 128:14548-14559
Kivonat
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Alternatively spliced exon B of myosin Va is essential for binding the tail-associated light chain shared by dynein
Zsuzsa Hódi
, Attila L. Németh
, László Radnai
, Csaba Hetényi
, Katalin Schlett
, Andrea Bodor
, András Perczel
, László Nyitray
Biochemistry
(2006)
45:12582-12595.
Kivonat
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Theoretical study on tertiary structural elements of β-peptides: Nanotubes formed from parallel-sheet-derived assemblies of β-peptides
Tamás Beke
, Imre G. Csizmadia
, András Perczel
J. Am. Chem. Soc.
(2006)
128:5158-5167.
Kivonat
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Local binding with globally distributed changes in a small protease inhibitor upon enzyme binding
Zoltán Gáspári
, Borbála Szenthe
, András Patthy
, William M. Westler
, László Gráf
, András Perczel
FEBS J.
(2006)
273:1831-1842.
Kivonat
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Determining suitable lego-structures to estimate stability of larger nanostructures using computational methods
Tamás Beke
, András Czajlik
, Imre G. Csizmadia
, András Perczel
Phys. Biol.
(2006)
3:S26-S39.
Kivonat
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Toward a rational design of β-peptide structures.
Tamás Beke
, Csaba Somlai
, András Perczel
J. Comput. Chem.
(2006)
27:20-38.
Kivonat
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A self-stabilized model of the chymotrypsin catalytic pocket. The energy profile of the overall catalytic cycle
Péter Hudáky
, András Perczel
Proteins
(2006)
62:749-759.
Kivonat
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Structural evidence for non-canonical binding of Ca2+ to a canonical EF-hand of a conventional myosin
Judit É. Debreczeni
, László Farkas
, Veronika Harmat
, Csaba Hetényi
, István Hajdú
, Péter Závodszky
, László Nyitray
, Kazuhiro Kohama
J. Biol. Chem.
(2005)
280(50):41458-41464. | PMID: 16227209
Kivonat
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A true autoactivating enzyme. Structural insight into mannose-binding lectin-associated serine protease-2 activations
Péter Gál
, Andrea Kocsis
, Tünde Bián
, Veronika Harmat
, László Barna
, Géza Ambrus
, Barbara Végh
, Robert B. Sim
, Péter Závodszky
, Gábor Náray-Szabó
J. Biol. Chem.
(2005)
280(39):33435-33444. | PMID: 16040602
Kivonat
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The structure of the complex of calmodulin with KAR-2: a novel mode of binding explains the unique pharmacology of the drug
István Horváth
, Veronika Harmat
, András Perczel
, Villő Pálfi
, László Nyitray
, Attila Nagy
, Emma Hlavanda
, Gábor Náray-Szabó
, Judit Ovádi
J. Biol. Chem.
(2005)
280(9):8266-8274. | PMID: 15596444
Kivonat
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Peptide models XLV: Conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins
András Láng
, Imre G. Csizmadia
, András Perczel
Proteins
(2005)
58(3):571-588. | DOI: 10.1002/prot.20307 | PMID: 15616985
Kivonat
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Surprisingly great difference in reactivity depending upon the ring size: solvolysis and molecular structure study of some N-trimethylsilylated cyclic ureas
Roland Szalay
, Gábor Pongor
, Veronika Harmat
, Zsolt Böcskei
, Dezső Knausz
Journal of Organometallic Chemistry
(2005)
690(6), 1498–1506 | doi:10.1016/j.jorganchem.2004.12.023
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Investigation of penetratin peptides. Part 2. In vitro uptake of penetratin and two of its derivatives
Tamás Letoha
, Ferenc Peták
, András Czajlik
, Ernő Duda
, Erzsébet Kusz
, Hristos Glavinas
, Zsolt Venkei
, Csaba Somlai
, Szilvia Gaál
, Botond Penke
J. Pept. Sci.
(2005)
11:805-811.
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Efficient recognition of folds in protein 3-D structures by the improved PRIDE algorithm.
Zoltán Gáspári
, Kristian Vlahovicek
, Sándor Pongor
Bioinformatics
(2005)
21:3322-3323.
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Toward direct determination of conformations of protein building units from multidimensional NMR experiments VI. Chemical shift analysis of His to gain 3D structure and protonation state information
Péter Hudáky
, András Perczel
J. Comput. Chem.
(2005)
26:1307-1317.
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Structure and stability of β-pleated sheets.
András Perczel
, Zoltán Gáspári
, Imre G. Csizmadia
J. Comput. Chem.
(2005)
26:1155-1168.
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Extended intermolecular interactions in a serine protease canonical inhibitor complex account for strong and highly specific inhibition
Krisztián Fodor
, Veronika Harmat
, Csaba Hetényi
, József Kardos
, József Antal
, András Perczel
, András Patthy
, Gergely Katona
, László Gráf
J. Mol. Biol.
(2005)
350:156-169.
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Solution state conformation and degradation of cyclopeptides containing an NGR motif
Anna K. Füzéry
, Nikolett Mihala
, Pál Szabó
, András Perczel
, Raffaella Giavazzi
, Helga Süli-Vargha
J. Pept. Sci.
(2005)
11(1):53-59.
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The structure of MBL-associated serine protease-2 reveals that identical substrate specificities of C1s and MASP-2 are realized through different sets of enzyme-substrate interactions
Veronika Harmat
, Péter Gál
, József Kardos
, Katalin Szilágyi
, Géza Ambrus
, Gábor Náray-Szabó
, Péter Závodszky
J. Mol. Biol.
(2004)
342(5):1533-1546. | PMID: 15364579
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Potential energy curves, surfaces and hypersurfaces. A model to follow and understand the conformational transformations in amino acids.
András Láng
, Anna K. Füzéry
, Tamás Beke
, Péter Hudáky
, András Perczel
J. Mol. Struct. (THEOCHEM)
(2004)
675(1-3):163-175. | http://dx.doi.org/10.1016/j.theochem.2003.12.047
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Natively unfolded tubulin polymerization promoting protein TPPP/p25 is a common marker of alpha-synucleinopathies
Gábor G. Kovács
, Herbert Budka
, Ellen Gelpi
, Attila Lehotzky
, László Tirián
, Anna Erdei
, Gábor Mező
, Ferenc Hudecz
, András Perczel
, Tamás Molnár
, Gerg Botond
, Evo Lindersson
, Poul Henning Jensen
, János Kovács
, Lajos László
, Judit Ovádi
Neurobiol Dis.
(2004)
17(2):155-162.
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Conformation dependence of pKa: ab initio and DFT investigation of histidine
Péter Hudáky
, András Perczel
J. Phys. Chem. A
(2004)
108(29):6195-6205.
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Solvation model induced structural changes in peptides. A quantum chemical study on Ramachandran surfaces and conformers of alanine diamide using the polarizable continuum model
Ilona Hudáky
, Péter Hudáky
, András Perczel
J. Comput. Chem.
(2004)
25(12):1522-1531.
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Stability issues of covalently and noncovalently bonded peptide subunits
András Perczel
, Péter Hudáky
, Anna K. Füzéry
, Imre G. Csizmadia
J. Comput. Chem.
(2004)
25(8):1084-1100.
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Peptide Models XXXII. Computed chemical shift analysis of penetratin fragments
András Czajlik
, András Perczel
J. Mol. Struct. (THEOCHEM)
(2004)
675(1-3): 129-139.
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Peptide models XLII. Ab initio study on conformational changes of N-formyl--histidinamide caused by protonation or deprotonation of its side chain.
Péter Hudáky
, András Perczel
J. Mol. Struct. (THEOCHEM)
(2004)
675(1-3): 117-127.
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A nomenclature of peptide conformers.
Ilona Hudáky
, Róbert Kiss
, András Perczel
J. Mol. Struct. (THEOCHEM)
(2004)
675(1-3): 177-183.
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Is there an excuse for the non-conformist? Notes on the calculated energies, atom-atom contacts and natural abundance of the different conformers of alanine in proteins.
Zoltán Gáspári
, Ilona Hudáky
, András Czajlik
, András Perczel
J. Mol. Struct. (THEOCHEM)
(2004)
675(1-3): 141-148.
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Binding crevice for TT-232 in a homology model of type 1 somatostatin receptor
Ágnes Simon
, András Czajlik
, András Perczel
, György Kéri
, Lajos Nyikos
, Zsuzsa Emri
, Julianna Kardos
Biochem. Biophys. Res. Commun.
(2004)
, 316(4):1059-1064.
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Multidimensional NMR identifies the conformational shift essential for catalytic competence in the 60 KDA Drosophila melanogaster dUTPase trimer
Zsófia Dubrovay
, Zoltán Gáspári
, Éva Hunyadi-Gulyás
, Katalin F. Medzihradszky
, András Perczel
, Beáta G. Vértessy
J. Biol. Chem.
(2004)
, 279(17): 17945-17950.
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On the flexibility of β-peptides
Tamás Beke
, Imre G. Csizmadia
, András Perczel
J. Comput. Chem.
(2004)
25:285-307.
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Vicinal disulfide bridge conformers by experimental methods and by ab initio and DFT molecular computations
Ilona Hudáky
, Zoltán Gáspári
, Oliviero Carugo
, Masa Cemazar
, Sándor Pongor
, András Perczel
Proteins
(2004)
55(1): 152-168.
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Same fold with different mobility: backbone dynamics of small protease inhibitors from the desert locust, Schistocerca gregaria
Borbála Szenthe
, Zoltán Gáspári
, Attila Nagy
, András Perczel
, László Gráf
Biochemistry
(2004)
, 43(12): 3376-3384.
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A simple fold with variations: the pacifastin inhibitor family
Zoltán Gáspári
, Csaba Ortutay
, András Perczel
Bioinformatics
(2004)
20(4):448-451.
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A conformational comparison of N- and C-protected methionine and N- and C-protected homocysteine
András Láng
, Krisztina György
, Imre G. Csizmadia
, András Perczel
J. Mol. Struct. (THEOCHEM)
(2003)
666–667:219–241. | http://dx.doi.org/10.1016/j.theochem.2003.08.029
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Lipophilicity of aminopyridazinone regioisomers
Massud A. S. Anwair
, László Károlyházy
, Diána Szabó
, Balázs Balogh
, István Kövesdi
, Veronika Harmat
, Judit Krenyácz
, Ákos Gellért
, Krisztina Takács-Novák
, Péter Mátyus
J Agric Food Chem.
(2003)
51(18):5262-5270. | DOI: 10.1021/jf0343938 | PMID: 12926868
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Membrane translocation of penetratin and its derivatives in different cell lines.
Tamás Letoha
, Sándor Gaál
, Csaba Somlai
, András Czajlik
, András Perczel
, Botond Penke
J. Mol. Recognit.
(2003)
16(5):272-279.
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Synthesis, solution structure analysis and antibody binding of cyclic epitope peptides from glycoprotein D of Herpes simplex virus type I.
Gitta Schlosser
, Sytske Welling-Wester
, Szilvia Bõsze
, András Perczel
, Matty Feijlbrief
, Zsuzsa Majer
, Elemér Vass
, Róbert Kiss
, Gábor Mező
, Ferenc Hudecz
Biophys. Chem.
(2003)
106(2):155-171.
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Intrinsically stable secondary structure elements of proteins: a comprehensive study of folding units of proteins by computation and by analysis of data determined by X-ray crystallography
András Perczel
, Imre Jákli
, Imre G. Csizmadia
Chem. Eur. J.
(2003)
9(21): 5332-5342
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Vicinal disulfide turns
Oliviero Carugo
, Masa Cemazar
, Sotir Zahariev
, Ilona Hudáky
, Zoltán Gáspári
, András Perczel
, Sándor Pongor
Protein Eng.
(2003)
16(9): 637-639.
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Structure-oriented rational design of chymotrypsin inhibitor models
Zoltán Mucsi
, Zoltán Gáspári
, György Orosz
, András Perczel
Protein Eng.
(2003)
16(9): 673-681.
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Toward direct determination of conformations of protein building units from multidimensional NMR experiments. V. NMR chemical shielding analysis of N-formyl-serinamide, a model for polar side-chain containing peptides
András Perczel
, Anna K. Füzéry
, Attila G. Császár
J. Comput. Chem.
(2003)
24(10): 1157-1171.
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A theoretical case study of type I and type II β-turns
Eszter Czinki
, Attila G. Császár
, András Perczel
Chem Eur J
(2003)
9(5): 1182-1191
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Cryo-bioorganic chemistry: freezing effect on stereoselection of L- and DL- alanine-N-carboxyanhydride oligomerization in dioxane solution
Tamás Vajda
, Miklós Hollósi
, Marianna Mák
CRYOLETTERS
(2003)
CRYOLETTERS 24: 253-259 | PMID: 12955172
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